Locus 8992

Sequence ID 3R_DroMel_CAF1
Location 24,107,333 – 24,107,436
Length 103
Max. P 0.785971
window14415

overview

Window 5

Location 24,107,333 – 24,107,436
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 87.99
Mean single sequence MFE -24.04
Consensus MFE -17.17
Energy contribution -18.97
Covariance contribution 1.80
Combinations/Pair 1.00
Mean z-score -2.15
Structure conservation index 0.71
SVM decision value 0.57
SVM RNA-class probability 0.785971
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24107333 103 + 27905053
CCAACGCACCCUUGAUUUCCGAGGGUAUAGGGUGUGGAAAAAAAGCAAAAUACCAUGGCAAAGUGGAAAAACUACUUACAAGUAUGUUAACAUGCGCAAUUGU
....((((((((.....((....))...))))))))........((..............((((((.....))))))....(((((....)))))))...... ( -26.10)
>DroSec_CAF1 294378 102 + 1
CCAUCGCACCAUAGAUUUUCGAGAGUAUAGGGUGUGGAAA-AAAGCAAAAUACCAUGGCAAAGUGGAAAAACUACUUACAAGUAUGUUAACAUGCGCAAUUGU
...(((((((....((((....))))....)))))))...-...((..............((((((.....))))))....(((((....)))))))...... ( -23.00)
>DroSim_CAF1 294490 102 + 1
CCAACGCACCCUAGAUUUCCGAGGGUAUAGGGUGUGGAAA-AAAGCAAAAUACCAUGGCAAAGUGGAAAAACUACUUACAAGUAUGUUAACAUGCGCAAUUGU
....(((((((((....((....))..)))))))))....-...((..............((((((.....))))))....(((((....)))))))...... ( -28.10)
>DroEre_CAF1 308108 83 + 1
-------------------CCAGAGUACAGGGUGUGGAAA-AAAGCAAAAUACCAUGGCAAAGUGGAAAAACUACUUACAAGUAUGUUAACAUGCGCAAUUGU
-------------------........((.(((((.....-........))))).))((.((((((.....))))))....(((((....)))))))...... ( -17.02)
>DroYak_CAF1 308361 102 + 1
CGAACGCACCCUUGGUAACCCAGAGUACAGGGUGUGGAAA-AAAGCAAAAUACCAUGGCAAAGUGGAAAAACUACUUACAAGUAUGUUAACAUGCGCAAUUGU
....(((((((((((....)))......))))))))....-...((..............((((((.....))))))....(((((....)))))))...... ( -26.00)
>consensus
CCAACGCACCCUAGAUUUCCGAGAGUAUAGGGUGUGGAAA_AAAGCAAAAUACCAUGGCAAAGUGGAAAAACUACUUACAAGUAUGUUAACAUGCGCAAUUGU
....((((((((................))))))))........((..............((((((.....))))))....(((((....)))))))...... (-17.17 = -18.97 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:24 2006