Locus 8991

Sequence ID 3R_DroMel_CAF1
Location 24,103,425 – 24,103,515
Length 90
Max. P 0.646476
window14414

overview

Window 4

Location 24,103,425 – 24,103,515
Length 90
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 81.13
Mean single sequence MFE -26.62
Consensus MFE -17.04
Energy contribution -19.52
Covariance contribution 2.48
Combinations/Pair 1.11
Mean z-score -1.72
Structure conservation index 0.64
SVM decision value 0.23
SVM RNA-class probability 0.646476
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24103425 90 + 27905053
----AGACCAGCAGCAGAUUUACCUAGUGGUUGUUGGUGUUUUGUUGCUGUUCCCGGUGGUGAUGUUGGCCACUCUGUCAAGUGCCAAUUAAAC
----.((.((((((((((..((((...........)))).)))))))))).))......((...((((((.(((......)))))))))...)) ( -27.40)
>DroPse_CAF1 310549 78 + 1
CCUGGGACCAGCAGCAGCUUUUCCUUGU------------UUUUUUUUUCUUUCUGCC----GUUUCGGCCACUCUGUCAAGUGGCAAUUAAAC
...((((..(((....)))..))))...------------..................----......((((((......))))))........ ( -16.10)
>DroSec_CAF1 290520 90 + 1
----AGACCAGCAGCAGAUUUACCUAGUGGUUGCUGGUGUUUUGUUGCUGUUCCCGGCGAUGGUGUUGGCCACUCUGUCAAGUGCCAAUUAAAC
----..(((((((((..(((.....))).)))))))))...(..((((((....))))))..).((((((.(((......)))))))))..... ( -30.60)
>DroSim_CAF1 290636 90 + 1
----AGACCAGCAGCAGAUUUACCUAGUGGUUGCUGGUGUUUUGUUGCUGUUCCCGGCGAUGGUGUUGGCCACUCUGUCAAGUGCCAAUUAAAC
----..(((((((((..(((.....))).)))))))))...(..((((((....))))))..).((((((.(((......)))))))))..... ( -30.60)
>DroEre_CAF1 304142 78 + 1
----AGACGAGCAGCAGAUUUACCUAGUGGCUGCUGGUGUUUUGUUGCU------------GAUGUUGGCCACUCUGUCAAGUGCCAAUUAAAC
----.....(((((((((..((((.(((....))))))).)))))))))------------...((((((.(((......)))))))))..... ( -25.40)
>DroYak_CAF1 304301 90 + 1
----AGACCAGCAGCAGAUUUACCUAGUGGUGGCUGGUGUUUUGUUGCUGUUCCUGGUGGUGAUGUUGGCCACUCUGUCAAGUGCCAAUUAAAC
----.((.((((((((((..((((.(((....))))))).)))))))))).))......((...((((((.(((......)))))))))...)) ( -29.60)
>consensus
____AGACCAGCAGCAGAUUUACCUAGUGGUUGCUGGUGUUUUGUUGCUGUUCCCGGCG_UGAUGUUGGCCACUCUGUCAAGUGCCAAUUAAAC
.....((.((((((((((..((((.(((....))))))).)))))))))).))...........((((((.(((......)))))))))..... (-17.04 = -19.52 +   2.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:23 2006