Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,039,029 – 3,039,125 |
Length | 96 |
Max. P | 0.940472 |
Location | 3,039,029 – 3,039,125 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 77.66 |
Mean single sequence MFE | -21.83 |
Consensus MFE | -12.60 |
Energy contribution | -13.37 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.11 |
Mean z-score | -1.68 |
Structure conservation index | 0.58 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683810 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3039029 96 + 27905053 GGAUCAAAG-CCAAACAAUUGGCAUCCGUGUUGCCACAAAUCAAAUGCUCGUAAUCGCAACAAUGAGCAAUUGCUG----GCAUUAGUCGCGAUUGUUUGU ((((....(-((((....))))))))).((((((......................))))))(..(((((((((.(----((....))))))))))))..) ( -27.65) >DroVir_CAF1 80674 88 + 1 -AAUCCAGA-GUAAACAAUCGG-AUUUGUGGAACCACAAAUCAAACACUCCU------AACAAUGAGAAAUCGCUC----GCAUUAGCCGCAAUUGUUUGG -...(((((-((...(....)(-(((((((....))))))))....))))..------((((((((....))((..----((....)).)).))))))))) ( -20.70) >DroPse_CAF1 27193 99 + 1 AAAUCAAAG-GCAAACAAUUGGAUUCCCUGCAGCCACAAAUCAAAUGCUCGUAAUCGUAACAAAGAGCAAUCGUUGGAUCGCAUUAGCCACAAUUGUUUG- .........-.((((((((((.......(((..(((.........(((((..............))))).....)))...))).......))))))))))- ( -19.72) >DroGri_CAF1 39647 90 + 1 -AAUCAAGAGGUAAACAAUUGGAAUCUGUGGAACCACAAAUCAAACACUCCU------AACAAUGAGAAAUCGUUC----GCAUUAGCCGCAAUUGUUUGG -..........((((((((((.....((((....))))............((------((.(((((....))))).----...))))...)))))))))). ( -17.50) >DroAna_CAF1 28453 96 + 1 CGAUCUGAG-CCAAACAAUUGGCAUCCGUGUAGCCACAAAUCAAAUGCUCGUAAUCGCAACAAUGAGCAAUCGCUC----ACAUUAGCCCCGAUUGUUUGG .........-((((((((((((.....(((....)))........(((((((..........)))))))...(((.----.....))).)))))))))))) ( -25.70) >DroPer_CAF1 27250 99 + 1 AAAUCAAAG-GCAAACAAUUGGAUUCCCUGCAGCCACAAAUCAAAUGCUCGUAAUCGUAACAAAGAGCAAUCGUUGGAUCGCAUUAGCCACAAUUGUUUG- .........-.((((((((((.......(((..(((.........(((((..............))))).....)))...))).......))))))))))- ( -19.72) >consensus _AAUCAAAG_GCAAACAAUUGGAAUCCGUGCAGCCACAAAUCAAAUGCUCGUAAUCG_AACAAUGAGCAAUCGCUC____GCAUUAGCCGCAAUUGUUUGG ...........((((((((((......(((....)))........(((((..............))))).....................)))))))))). (-12.60 = -13.37 + 0.78)
Location | 3,039,029 – 3,039,125 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 77.66 |
Mean single sequence MFE | -26.83 |
Consensus MFE | -17.41 |
Energy contribution | -17.94 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.21 |
Mean z-score | -2.00 |
Structure conservation index | 0.65 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.940472 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3039029 96 - 27905053 ACAAACAAUCGCGACUAAUGC----CAGCAAUUGCUCAUUGUUGCGAUUACGAGCAUUUGAUUUGUGGCAACACGGAUGCCAAUUGUUUGG-CUUUGAUCC .((((((((((((((.((((.----.(((....)))))))))))))))).((((((.((((((((((....)))))))..))).)))))))-.)))).... ( -33.50) >DroVir_CAF1 80674 88 - 1 CCAAACAAUUGCGGCUAAUGC----GAGCGAUUUCUCAUUGUU------AGGAGUGUUUGAUUUGUGGUUCCACAAAU-CCGAUUGUUUAC-UCUGGAUU- ((....((((((.((....))----..))))))..........------.((((((((.((((((((....)))))))-).))).....))-)))))...- ( -23.40) >DroPse_CAF1 27193 99 - 1 -CAAACAAUUGUGGCUAAUGCGAUCCAACGAUUGCUCUUUGUUACGAUUACGAGCAUUUGAUUUGUGGCUGCAGGGAAUCCAAUUGUUUGC-CUUUGAUUU -((((((((((..((((..((((((....))))))((..((((.((....))))))...))....))))..).((....))))))))))).-......... ( -25.50) >DroGri_CAF1 39647 90 - 1 CCAAACAAUUGCGGCUAAUGC----GAACGAUUUCUCAUUGUU------AGGAGUGUUUGAUUUGUGGUUCCACAGAUUCCAAUUGUUUACCUCUUGAUU- ..(((((((((.((......(----((((.((((((.......------)))))))))))(((((((....))))))))))))))))))...........- ( -21.30) >DroAna_CAF1 28453 96 - 1 CCAAACAAUCGGGGCUAAUGU----GAGCGAUUGCUCAUUGUUGCGAUUACGAGCAUUUGAUUUGUGGCUACACGGAUGCCAAUUGUUUGG-CUCAGAUCG (((((((((...(((.(((((----..(..(((((........)))))..)..)))))..(((((((....)))))))))).)))))))))-......... ( -31.80) >DroPer_CAF1 27250 99 - 1 -CAAACAAUUGUGGCUAAUGCGAUCCAACGAUUGCUCUUUGUUACGAUUACGAGCAUUUGAUUUGUGGCUGCAGGGAAUCCAAUUGUUUGC-CUUUGAUUU -((((((((((..((((..((((((....))))))((..((((.((....))))))...))....))))..).((....))))))))))).-......... ( -25.50) >consensus CCAAACAAUUGCGGCUAAUGC____CAACGAUUGCUCAUUGUU_CGAUUACGAGCAUUUGAUUUGUGGCUACACGGAUUCCAAUUGUUUGC_CUUUGAUU_ .((((((((((.................(((.(((((..............))))).))).((((((....))))))...))))))))))........... (-17.41 = -17.94 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:57 2006