| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,100,453 – 24,100,544 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 24,100,453 – 24,100,544 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 87.20 |
| Mean single sequence MFE | -36.74 |
| Consensus MFE | -22.71 |
| Energy contribution | -23.26 |
| Covariance contribution | 0.55 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24100453 91 + 27905053 AGAGUCAAAGGCUGCCGCUGCCACAUAAUCAUGGCCAUGAAAGCCGAGUCUUCACUGUGGGAGACGGCA---GCCUGGUGGUGCCGGGGAUCAG .((..(..(((((((((((.((((.......((((.......))))(((....))))))).)).)))))---))))((.....))..)..)).. ( -36.30) >DroSec_CAF1 287751 76 + 1 AGAGUCAAAGGCUGCCGCUGCCACAUAAUCAUGGCCAUGAAAGCCGAGGCUUCACUGUG------------------GUGGUGGCGGGGAUCAG ...........(((((((..(((((...((((....))))((((....))))...))))------------------)..)))))))....... ( -30.70) >DroSim_CAF1 287664 91 + 1 AGAGUCAAAGGCUGCCGCUGCCACAUAAUCAUGGCCAUGAAAGCCGAGGCUUCACUGUGGGAGACGGCA---GCCUGGUGGUGCCGGGGAUCAG .((..(..(((((((((((.(((((...((((....))))((((....))))...))))).)).)))))---))))((.....))..)..)).. ( -39.10) >DroEre_CAF1 301303 91 + 1 AGCGUCAAAGGCUGGCGCUGCCACAUAAUCAUGGCCGUGAAAGCCCAGGCUUCACUGUGGGAGACGGCA---GCCCGGUAGUUCCGGGGAUCAC (((((((.....)))))))((((........)))).((((((((....))))..((((.(....).)))---)(((((.....)))))..)))) ( -37.50) >DroYak_CAF1 301300 94 + 1 AGAGUCAAAGGCUGGCGCUGCCACAUAAUCAUGGCCAUGAAAGCCGAGGCUUCACUGUGGGAGACGGCAGUAGCCUGGUAGUGUCGGGGAUCAG ...........(((((((((((.........((((.......))))(((((..(((((.(....).)))))))))))))))))))))....... ( -40.10) >consensus AGAGUCAAAGGCUGCCGCUGCCACAUAAUCAUGGCCAUGAAAGCCGAGGCUUCACUGUGGGAGACGGCA___GCCUGGUGGUGCCGGGGAUCAG ...........(((((((((((.((((.((((....))))((((....))))...))))......(((....))).)))))))))))....... (-22.71 = -23.26 + 0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:19 2006