Locus 8987

Sequence ID 3R_DroMel_CAF1
Location 24,099,567 – 24,099,660
Length 93
Max. P 0.980058
window14407

overview

Window 7

Location 24,099,567 – 24,099,660
Length 93
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 96.58
Mean single sequence MFE -24.38
Consensus MFE -24.66
Energy contribution -24.10
Covariance contribution -0.56
Combinations/Pair 1.10
Mean z-score -1.47
Structure conservation index 1.01
SVM decision value 1.85
SVM RNA-class probability 0.980058
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24099567 93 - 27905053
-UUUUUAAUAAGACUUUUUGUUGGCUUUACGCUGCAUUUGGGUAGCAGAUGGAGCAAGAGUCAGCGAGUUAUCAAGUGGCUUUUGUGGAUUUUG
-......((((((....(((((((((((..(((.((((((.....)))))).))).)))))))))))(((((...)))))))))))........ ( -24.70)
>DroSec_CAF1 286866 94 - 1
GUUUUUAAUAAGACUUUUUGUUGGCUUUACGCUGCAUUUGGGUAGCAGAUGGAGCAGGAGUCAGCGAGUUAUCAAGUGGCUUUUGUGGAUUUUG
(((((....))))).....(((((((((..(((.((((((.....)))))).))).)))))))))(((((((...)))))))............ ( -25.20)
>DroSim_CAF1 286785 94 - 1
GUUUUUAAUAAGACUUUUUGUUGGCUUUACGCUGCAUUUGGGUAGCAGAUGGAGCAGGAGUCAGCGAGUUAUCAAGUGGCUUUUGUGGAUUUUG
(((((....))))).....(((((((((..(((.((((((.....)))))).))).)))))))))(((((((...)))))))............ ( -25.20)
>DroEre_CAF1 300399 92 - 1
-U-UUUAAUAAGACUUUUUGUUGGCUUUACGCUGCAUUUGGGUGGCAGAUGGAGCCGGAGUCGGCGAGUUAUCAAGUGGCUUUUGUGGAUUUUG
-.-........(((.....)))((((((((((..(......)..)).).)))))))((((((.(((((((((...)))))))..)).)))))). ( -24.00)
>DroYak_CAF1 300327 93 - 1
-UUUUUAAUAAGACUUUUUGUUGGCUUUACGCUGCAUUUGGGUAGCAGAUGGAGCAGGAGUCGGCGGGUUAUCAAGUGGCUUUUGUGGAUUUUG
-..........((...((((((((((((..(((.((((((.....)))))).))).))))))))))))...))..................... ( -22.80)
>consensus
_UUUUUAAUAAGACUUUUUGUUGGCUUUACGCUGCAUUUGGGUAGCAGAUGGAGCAGGAGUCAGCGAGUUAUCAAGUGGCUUUUGUGGAUUUUG
.......((((((....(((((((((((..(((.((((((.....)))))).))).)))))))))))(((((...)))))))))))........ (-24.66 = -24.10 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:17 2006