Locus 8986

Sequence ID 3R_DroMel_CAF1
Location 24,099,452 – 24,099,543
Length 91
Max. P 0.854592
window14406

overview

Window 6

Location 24,099,452 – 24,099,543
Length 91
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 84.61
Mean single sequence MFE -24.12
Consensus MFE -17.86
Energy contribution -17.82
Covariance contribution -0.04
Combinations/Pair 1.15
Mean z-score -2.05
Structure conservation index 0.74
SVM decision value 0.80
SVM RNA-class probability 0.854592
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24099452 91 - 27905053
AAUUUUGACUGGAUGAGCGCAAAGGCAGGAAGCUCGAGUUACA---------AAAUCAACUUAGAUACUCUAUUUAUAUUUAUCUAGCCAGAUAU-----UUCCC
...((((.((((((((((.............))))((((....---------..(((......)))))))...........)))))).))))...-----..... ( -15.82)
>DroSec_CAF1 286742 100 - 1
AAUUUUGGCUGGAUGAGCGCAAAGGCAGGAAGCUCGAGUUACAAAGCUCGCAAAAUCAACUUAGAUACUCUAUUUAUAUUCAUCUAGCCAGAUUU-----UUCCC
...((((((((((((((.((...(((.....))).(((((....)))))))..........(((.....)))......))))))))))))))...-----..... ( -29.30)
>DroSim_CAF1 286661 100 - 1
AAUUUUGGCUGGAUGAGCGCAAAGGCAGGAAGCUCGAGUUACAAAGCUCGCAAAGUCAACUUAGAUACUCUAUUUAUAUUCAUCUAGCCAGAUAU-----UUUCC
...((((((((((((((.((...(((.....))).(((((....)))))))...(((......)))............))))))))))))))...-----..... ( -29.50)
>DroEre_CAF1 300275 100 - 1
AAUUUUGGCUGGAUGAGCGCAGCAGCACGAAGCUCGUGUUACAAAGCUCACAAAAUCAACUUGGAUACUUUAUUUAUAUUUAUCUAGCCAGAUAU-----UUCCC
...(((((((((((((((...(.((((((.....)))))).)...)))).....(((......)))...............)))))))))))...-----..... ( -29.40)
>DroYak_CAF1 300198 105 - 1
AAUUUUGGCUGGAUGAGCGCAGGAGCACGAAGCUUGUCUUACAAAGCUCACAGAAUCAACUUAGAUGCAUUAUUUAUAUUUAUCUAACCACAUACUUUACUUUCC
.....((((((..(((((....(((.((((...))))))).....)))))))).......(((((((.((.......)).))))))))))............... ( -16.60)
>consensus
AAUUUUGGCUGGAUGAGCGCAAAGGCAGGAAGCUCGAGUUACAAAGCUCACAAAAUCAACUUAGAUACUCUAUUUAUAUUUAUCUAGCCAGAUAU_____UUCCC
...((((((((((((((......(((.....)))....................(((......)))............))))))))))))))............. (-17.86 = -17.82 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:16 2006