| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,096,945 – 24,097,046 |
| Length | 101 |
| Max. P | 0.967284 |
| Location | 24,096,945 – 24,097,046 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.10 |
| Mean single sequence MFE | -22.37 |
| Consensus MFE | -11.25 |
| Energy contribution | -11.17 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.50 |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.967284 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24096945 101 + 27905053 UUUUAUUGCCCCAUGCGGCGUUCAUGUCAACAUUUUUGAUUUUUUCACUUGAUAAAAUCAAU-----GCAUUU--UUAUGCGGACAAUGGCAAAACAACAAA----------AAAA--CA .....(((((((....))......((((.......((((((((.((....)).))))))))(-----((((..--..)))))))))..))))).........----------....--.. ( -21.20) >DroPse_CAF1 303429 93 + 1 UUUUAUUGCCCCAUGCGGCGGUCGUGUCAACAUUUUUGAUUUUUGCACUUGAUAAAAUCAAUGCAAUGCAUUU--UUAUGCGAACAAC-----------AA------------GAA--CA ...(((.(((((....)).))).)))......((((((....(((((.(((((...))))))))))(((((..--..))))).....)-----------))------------)))--.. ( -18.80) >DroGri_CAF1 263120 97 + 1 UU--AUUGCGAGAAG---CGGAUCUGUCAAUAAUUUUGAUUUUUACACUUGUUAAAGUCAAU-----GCAUUUUUUUAUGGGCACAAGGCCAG-CCAACAAC------------AAACGA ((--((((..(((..---....)))..))))))..((((((((.((....)).)))))))).-----.(((......)))(((.....)))..-........------------...... ( -14.30) >DroWil_CAF1 339825 85 + 1 UUUUAUUGCU--AUAUGGCGGCCUUGUCAACAUUUUUGAUUUUUGCACUUGAUAAAAUCAAU-----GCAUUU--UUAUGUGGACAAGGCCGCG-------------------------- ..........--.....(((((((((((.((((....((....((((.(((((...))))))-----)))..)--).)))).))))))))))).-------------------------- ( -31.70) >DroMoj_CAF1 322919 95 + 1 UUUUGUUUACAAAAG---CGGAUCUGUCAGUGAUUUUGAUUUUUACACUUGUUAAAGUCAAU-----GCAUUU--UUAUGGGGACAAGGCCGA-CAGACAAA------------AA--CA .(((((((....)))---))))((((((((((...((((((((.((....)).)))))))).-----.)))).--...((....)).....))-))))....------------..--.. ( -22.40) >DroAna_CAF1 293275 111 + 1 UUUUAUUGCCCCAGGCGGCGGCCAUGUCAACAUUUUUGAUUUUUUCACUUGAUAAAAUCAAU-----GCAUUU--UUAUGCGGACAAUGCCAAAACAACAACAUUGCCAGCAGAAG--CA .......(((...)))((((((..((((.......((((((((.((....)).))))))))(-----((((..--..)))))))))..))).....((.....))))).((....)--). ( -25.80) >consensus UUUUAUUGCCCCAUGCGGCGGACAUGUCAACAUUUUUGAUUUUUACACUUGAUAAAAUCAAU_____GCAUUU__UUAUGCGGACAAGGCCAA__CAACAA_____________AA__CA ...................((.((((((.......((((((((.((....)).))))))))......((((......)))).))).)))))............................. (-11.25 = -11.17 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:13 2006