| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,093,687 – 24,093,777 |
| Length | 90 |
| Max. P | 0.709546 |
| Location | 24,093,687 – 24,093,777 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 93.43 |
| Mean single sequence MFE | -28.77 |
| Consensus MFE | -23.41 |
| Energy contribution | -23.63 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.709546 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24093687 90 - 27905053 -AUCGCCGACUAACAUUCAAAGUUGGUCGCAUCAAGCCACAUUGUUAGCGCUAACUACCAGGAAAGGCCCGUGGCGUUUUCUGUUCCAGGC -...((.(((((((.......))))))))).....(((.....((((....))))...(((((((.(((...))).))))))).....))) ( -27.50) >DroSec_CAF1 281016 90 - 1 -UUCGCCGACUAACAUUCAAAGUUGGCCGCAUCAAGCCACAUUGUUAGCGCUAACUACCAGGAAAGCCCUGCGGCCUUUUCUGUUCCAGGC -...(((.............(((((((.((..(((......)))...)))))))))..((((((((((....)).)))))))).....))) ( -25.60) >DroSim_CAF1 280729 90 - 1 -AUCGCCGACUAACAUUCAAAGUUGGCCGCAUCAAGCCACAUUGUUAGCGCUAACUACCAGGAAAGGCCUGCGGCCUUUUCUGUUCCAGGC -...(((.............(((((((.((..(((......)))...)))))))))..(((((((((((...))))))))))).....))) ( -31.70) >DroEre_CAF1 294414 89 - 1 -GCCGCCGACU-ACAUUCAAAGUUGGCCGCAUCAAGCCACAUUGUUAGCGCUAACUACCAGGAAAGGCCUGCGGCGUUUUCUGUUCCAGGC -((.(((((((-........))))))).)).....(((.....((((....))))...(((((((.(((...))).))))))).....))) ( -30.40) >DroYak_CAF1 293276 91 - 1 CGCCGCCGACUAACAUUCAAAGUUGGCCGCAUCAAGCCACAUUGUUAGCGCUAACUACCAGGAAAGGCCUGCGGCGUUUUCUGUUCCAGGC .((.(((((((.........))))))).)).....(((.....((((....))))...(((((((.(((...))).))))))).....))) ( -29.90) >DroAna_CAF1 290207 90 - 1 -ACCAUCGACCAACAUUCAAAGUUGGUCGCAUCAAGCCACAUUGUUAGCGCUAACUACCAGGAAAGCCUUUCGGCGUUUUCUGUUCCAGGC -.....((((((((.......))))))))......(((.....((((....))))...((((((((((....))).))))))).....))) ( -27.50) >consensus _ACCGCCGACUAACAUUCAAAGUUGGCCGCAUCAAGCCACAUUGUUAGCGCUAACUACCAGGAAAGGCCUGCGGCGUUUUCUGUUCCAGGC ....(((.............((((((.(((..(((......)))...)))))))))..(((((((.(((...))).))))))).....))) (-23.41 = -23.63 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:07 2006