Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,037,242 – 3,037,343 |
Length | 101 |
Max. P | 0.793372 |
Location | 3,037,242 – 3,037,343 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 83.17 |
Mean single sequence MFE | -22.53 |
Consensus MFE | -16.38 |
Energy contribution | -17.27 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.04 |
Mean z-score | -2.08 |
Structure conservation index | 0.73 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.793372 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3037242 101 - 27905053 UGUAAGUGGUGAAAGUACUAAACGAGGGUUAAAAGAAAGUGAGUUUUAGCUAGAUUCUUUGUGCUAGGUGACUGGUAACUUCCAACUACUUUCAAUAUUAA ....((((.((((((((......((((....((((((....(((....)))...)))))).((((((....)))))).))))....)))))))).)))).. ( -25.10) >DroSec_CAF1 24207 101 - 1 CGAUAAUGGUGAAAGUACUAAACGAGAGUUAAAAGAAAGUGAGUUUUAGCUAGAUUCUUUGUGCUAAGUGACUGGUAAAUUUCAGCUACUUUCGAUAUAAA (((..........(((((..(((....))).((((((....(((....)))...)))))))))))(((((.((((......)))).))))))))....... ( -19.30) >DroSim_CAF1 24420 86 - 1 CGUAAGUGGUGAAAGUACUAAACGAGAGUUAAAAGAAAGUGAGUUUUAGCUAGAUUC---------------UGGUAACUUUCAGCUACUUUCGAUAUAAA ((.((((((((((((((((((((....)))..........((((((.....))))))---------------)))).))))))).)))))).))....... ( -23.20) >consensus CGUAAGUGGUGAAAGUACUAAACGAGAGUUAAAAGAAAGUGAGUUUUAGCUAGAUUCUUUGUGCUA_GUGACUGGUAACUUUCAGCUACUUUCGAUAUAAA ((.((((((((((((((((((((....)))..........((((((.....))))))...............)))).))))))).)))))).))....... (-16.38 = -17.27 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:55 2006