Locus 8979

Sequence ID 3R_DroMel_CAF1
Location 24,086,897 – 24,086,987
Length 90
Max. P 0.794331
window14391

overview

Window 1

Location 24,086,897 – 24,086,987
Length 90
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 81.32
Mean single sequence MFE -21.82
Consensus MFE -12.61
Energy contribution -12.92
Covariance contribution 0.31
Combinations/Pair 1.14
Mean z-score -2.47
Structure conservation index 0.58
SVM decision value 0.60
SVM RNA-class probability 0.794331
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24086897 90 - 27905053
UUCGUAGUGCACUCACGGC---CUGCUUGUCUGGCUUUAUGAAUUAUUGUAAUGGCCGCCAAAUGAAAUUAUAAAUUUCAUUGGCCAAGAAAC
...((((.((.......))---))))...((((((((((..(....)..))).))))(((((.((((((.....)))))))))))..)))... ( -23.30)
>DroSec_CAF1 274496 90 - 1
UUCGUAGUUCACUUACGGC---CUGCUUGUCUGGCUUUAUGAAUUAUUGUAAUGGCCGCCAAAUGAAAUUAUAAAUUUCAUUGGCCAAGAAAC
(((((((((((..((.(((---(.........)))).)))))))))).....((((((....(((((((.....))))))))))))).))).. ( -23.80)
>DroSim_CAF1 274527 90 - 1
UUUGUAGUGCACUCACGGC---CUGCUUGUCUGGCUUUAUGAAUUAUUGUAAUGGCCGCCAAAUGAAAUUAUAAAUUUCAUUGGCCAAGAAAC
...((((.((.......))---))))...((((((((((..(....)..))).))))(((((.((((((.....)))))))))))..)))... ( -23.00)
>DroEre_CAF1 288731 81 - 1
---------CACUCCAGGC---CAGCUUGUCUGGCUUUAUGAAUUAUUGUAAUGGCCAGCAAAUGAAAUUAUAAAUUUCAUUGGCCAAGUAAC
---------.......(((---((..(((.(((((((((..(....)..))).)))))))))(((((((.....))))))))))))....... ( -25.20)
>DroYak_CAF1 286464 81 - 1
---------CACUCCAGGC---CAGCUUGUCUGGCUUUAUGAAUUAUUGUAAUGGCCACCAAAUGAAAUUAUAAAUUUCAUUGGCCAAGUAAC
---------.(((..((((---(((.....)))))))...............((((((....(((((((.....))))))))))))))))... ( -21.90)
>DroPer_CAF1 296638 80 - 1
-------------AGAGGUCUAGUGCUUUUUUUUCUCUAUGAAUUAUUAUAAUGGUCAGUAAAUUAAAUUAUAAAUUGCAUUGGCCAAACAAC
-------------...((.(((((((......(((.....)))...(((((((..............)))))))...)))))))))....... ( -13.74)
>consensus
_________CACUCAAGGC___CUGCUUGUCUGGCUUUAUGAAUUAUUGUAAUGGCCACCAAAUGAAAUUAUAAAUUUCAUUGGCCAAGAAAC
................(((............(((((((((((....)))))).)))))...((((((((.....)))))))).)))....... (-12.61 = -12.92 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:03 2006