Locus 8976

Sequence ID 3R_DroMel_CAF1
Location 24,077,100 – 24,077,206
Length 106
Max. P 0.758673
window14386

overview

Window 6

Location 24,077,100 – 24,077,206
Length 106
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 72.20
Mean single sequence MFE -22.95
Consensus MFE -14.70
Energy contribution -15.07
Covariance contribution 0.38
Combinations/Pair 1.24
Mean z-score -1.54
Structure conservation index 0.64
SVM decision value 0.50
SVM RNA-class probability 0.758673
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24077100 106 + 27905053
GGGUGCGAGGCGAAGCAAAAGGACGUACAAUGGGUGACGAAUUUAUCCCUAUUUGCAUAUCAUUUCGCAAGUUAACGGUGAGUGCACUCACCACAAACACACAUGC
...(((((((.((.((((((((..(((.(.(.(....).).).))).))).)))))...)).))))))).(((...((((((....))))))...)))........ ( -27.40)
>DroPse_CAF1 286914 80 + 1
---------------------CAUGUUCU-GGGGUGACGAAUUUAUCCCUAUUUGCAUAUCAUUUUGCACGUUAACGGUGGAUGCGUUUGCCACAAACA----UGC
---------------------((((((.(-(.((..(((.(((((((...((.((((........)))).))....))))))).)).)..)).))))))----)). ( -21.40)
>DroAna_CAF1 278762 87 + 1
------G-------------CAACAUGCAAUGGGUGAUGAAUUUAUCCCUAUUUGCAUAUUAUUUCACAAGUUAACGGUGGGUGCACUCGCCACAAAUACACAUAA
------.-------------....((((((((((.((((....)))))))).))))))..................((((((....)))))).............. ( -21.60)
>DroPer_CAF1 288647 80 + 1
---------------------CAUGUUCU-GGGGUGACGAAUUUAUCCCUAUUUGCAUAUCAUUUUGCACGUUAACGGUGGAUGCGUUUGCCACAAACA----UGC
---------------------((((((.(-(.((..(((.(((((((...((.((((........)))).))....))))))).)).)..)).))))))----)). ( -21.40)
>consensus
_____________________CACGUUCA_GGGGUGACGAAUUUAUCCCUAUUUGCAUAUCAUUUCGCAAGUUAACGGUGGAUGCACUCGCCACAAACA____UGC
................................(((((((.(((((((...(((((((........)))))))....))))))).)).))))).............. (-14.70 = -15.07 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:59 2006