Locus 8975

Sequence ID 3R_DroMel_CAF1
Location 24,075,885 – 24,075,986
Length 101
Max. P 0.987116
window14385

overview

Window 5

Location 24,075,885 – 24,075,986
Length 101
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 80.59
Mean single sequence MFE -20.86
Consensus MFE -17.51
Energy contribution -17.63
Covariance contribution 0.12
Combinations/Pair 1.12
Mean z-score -2.34
Structure conservation index 0.84
SVM decision value 2.07
SVM RNA-class probability 0.987116
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24075885 101 - 27905053
AACGGCAGCAGCAUUUUAUGGCGCAGCUUAAGUGCUUCAAAAAUUUCACGUAAUGCACUCAAAGCAACGUCUGCCGACCCACCCUACCCUCACCCUCAACC
..(((((((.((........))...((((.(((((...................)))))..))))...).))))))......................... ( -22.31)
>DroEre_CAF1 278057 81 - 1
AGCGGCAGCAGCAUUUUAUGGCGCAGCUUAAGUGCUUCAAAAAUUCCACGUAAUGCACUCAAAGCAACGUCUGCCGACCCU--------------------
..(((((((.((........))...((((.(((((...................)))))..))))...).)))))).....-------------------- ( -22.01)
>DroWil_CAF1 319488 76 - 1
ACAGGCAGCAGCAUUUUAUGCUUCAGCUUAAGUGCUUCAAAAAUUCCACGUAAUGCACUCAAAGCAACUUCUGUCC-------------------------
...(((((.(((((...)))))...((((.(((((...................)))))..)))).....))))).------------------------- ( -16.81)
>DroYak_CAF1 277735 81 - 1
AACGGCAGCAGCAUUUUAUGGCGCAGCUUAAGUGCUUCAAAAAUUCCACGUAAUGCACUCAAAGCAACGUCUGCCGACCCU--------------------
..(((((((.((........))...((((.(((((...................)))))..))))...).)))))).....-------------------- ( -22.31)
>consensus
AACGGCAGCAGCAUUUUAUGGCGCAGCUUAAGUGCUUCAAAAAUUCCACGUAAUGCACUCAAAGCAACGUCUGCCGACCCU____________________
..((((((..((........))...((((.(((((...................)))))..)))).....))))))......................... (-17.51 = -17.63 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:58 2006