Locus 8972

Sequence ID 3R_DroMel_CAF1
Location 24,066,793 – 24,066,902
Length 109
Max. P 0.930498
window14380

overview

Window 0

Location 24,066,793 – 24,066,902
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 93.58
Mean single sequence MFE -26.30
Consensus MFE -23.24
Energy contribution -23.32
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -1.53
Structure conservation index 0.88
SVM decision value 1.21
SVM RNA-class probability 0.930498
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24066793 109 - 27905053
GCCAAAGUGCAAAAUGCAGUAAAAUAUUGAAAUUGUACAGUUCCCGUUGUGCAAUGAGCCGCAAUGCCAGCGACGUUUCAGUGUUCUCUCUGCACUAUUUUUAUAUUUU
...((((((.(((((((((...(((((((((((.((...(((..((((((((.....).)))))))..))).)))))))))))))....)))))....)))).)))))) ( -26.00)
>DroSec_CAF1 261480 109 - 1
GCCAAAGUGCAAAAUGCAGUAAAAUAUUGAAAUUGUACAGUUCCCGUUGUGCAAUGAGCCGCAAUGCCAGCGACGUUUCAGUGUUCUCUCUGCACUAUUUUUAUAUUUU
...((((((.(((((((((...(((((((((((.((...(((..((((((((.....).)))))))..))).)))))))))))))....)))))....)))).)))))) ( -26.00)
>DroEre_CAF1 273558 109 - 1
GCCAAAGUGCAAAAUGCAGUAAAAUAUUGAAAUUGUACAGUUCCCGUUGUGCAAUGAGCCGCAAUGCCAGCGACGUUUCAGUGUUCUCUCUGCACUAUUUUUGUAUUUU
...((((((((((((((((...(((((((((((.((...(((..((((((((.....).)))))))..))).)))))))))))))....)))))....))))))))))) ( -32.30)
>DroYak_CAF1 273090 109 - 1
GCCAAAGUGCAAAAUGCAGUAAAAUAUUGAAAUUGUACAGUUCCCGUUGUGCAAUGAGCCGCAAUGCCAGCGACGUUUCAGUGUUCUCUCUGCACUAUUUUUGUUUUUU
...((((.(((((((((((...(((((((((((.((...(((..((((((((.....).)))))))..))).)))))))))))))....)))))....)))))).)))) ( -28.20)
>DroAna_CAF1 271859 104 - 1
GCCAAAGUGCAAAAUGCAGUAAAAUAUUGAAAUUGUACAGUUCCCGUUGUGCAAUGAGCCGCAAUACCAGCGACGUUUUUGUAUUUCCCCUUCAU-----AUAUAUUUU
....((((((((((((..((....(((((..(((((((((......)))))))))......)))))...))..)).)))))))))).........-----......... ( -19.00)
>consensus
GCCAAAGUGCAAAAUGCAGUAAAAUAUUGAAAUUGUACAGUUCCCGUUGUGCAAUGAGCCGCAAUGCCAGCGACGUUUCAGUGUUCUCUCUGCACUAUUUUUAUAUUUU
((......))....(((((...((((((((((((((((((......)))))))))..(.(((.......))).)..)))))))))....)))))............... (-23.24 = -23.32 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:53 2006