Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,035,691 – 3,035,805 |
Length | 114 |
Max. P | 0.926487 |
Location | 3,035,691 – 3,035,805 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 80.97 |
Mean single sequence MFE | -32.73 |
Consensus MFE | -25.83 |
Energy contribution | -25.45 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.21 |
Mean z-score | -2.01 |
Structure conservation index | 0.79 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3035691 114 - 27905053 AUUGUGGUAGCCACGAUUCGUCGGCGGUCUACCAGACUGCCACUCGGUGGCAGUGAUGACAAAGGUACC-AAAGCUCUACCCAGGGUACUGCAAAAAAAAAAUAGCAAAAUUAUA .(((..(((.((..........(((((((.....)))))))....(((((.(((..((..........)-)..))))))))..)).)))..)))..................... ( -34.30) >DroSim_CAF1 22880 112 - 1 AUUGUGGUAGCCACGAUUCGUCGGCAGUCUACCAGACUGCCACUCGGUGGCAGUGAUGACAAAGGUACCCCAAACUCUACCCAGGGUACUACAAAA---AAAUAGCAGAAUUAUA .((((.((.(((((((....))(((((((.....))))))).....)))))....)).)))).(((((((.............)))))))......---................ ( -34.92) >DroEre_CAF1 22895 101 - 1 AUUGUGGUAGCCACGACUCGUCGGCGGUCUAGCAGACUGGCACUCGGUAGCAGUGAUGGCAAAGGUACU-A-AGCUUAGACCAGGGUACUACAAGA---A---------AUUACA .((((((((.((.(((....)))..((((((((......)).((..(((.(..((....))..).))).-.-))..)))))).)).))))))))..---.---------...... ( -32.60) >DroYak_CAF1 24353 111 - 1 AUUGUGGUAGCCACGACUCGACGGCGGCUUAGCAGACUGGCACUUGGUAUCAGUGAUGGCAAAGGUACU-AAAGCUUAACGCAGGGUACUGCAAAA---AAUAUGCUAAAUUAAA .((((...((((.((......))..))))..))))..(((((.((((((((..((....))..))))))-))........((((....))))....---....)))))....... ( -29.10) >consensus AUUGUGGUAGCCACGACUCGUCGGCGGUCUACCAGACUGCCACUCGGUAGCAGUGAUGACAAAGGUACC_AAAGCUCAACCCAGGGUACUACAAAA___AAAUAGCAAAAUUAUA .((((((((.((..........(((((((.....)))))))....((((.(..((....))..).))))..............)).))))))))..................... (-25.83 = -25.45 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:55 2006