| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,062,701 – 24,062,798 |
| Length | 97 |
| Max. P | 0.981985 |
| Location | 24,062,701 – 24,062,798 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 74.45 |
| Mean single sequence MFE | -21.55 |
| Consensus MFE | -16.62 |
| Energy contribution | -16.95 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.90 |
| SVM RNA-class probability | 0.981985 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24062701 97 + 27905053 ACGAAUUUAAACCAGAUAUAUU---AAGAA---------UAAAUCUGUGCUCUCACCCCUCAGUUUCUCCACCAAGGAGGCGGCCACCCACGCCAUCGUCGCCGUUAAC ((((........(((((.(((.---....)---------)).)))))..........(((..((......))..))).((((........)))).)))).......... ( -16.20) >DroSec_CAF1 257763 97 + 1 ACGAAUUUAAGCCUUAUAUAUU---AAGCA---------UAAAUUUGUUCUCUCACCUCUCAGUUUCUCCACCAAGGAGGCGGCCACCCACGCCAUCGUGGCCGUUAAC (((((((((.((.(((.....)---)))).---------)))))))))..................((((.....))))((((((((..........)))))))).... ( -26.60) >DroSim_CAF1 255799 97 + 1 ACGAAUUUAAGCCUUAUAUAUU---AAGCA---------UAAAUUUGUUCUCUCACCUCUCAGUUUCUCCACCAAGGAGGCGGCCACCCACGCCAUCGUGGCCGUUAAC (((((((((.((.(((.....)---)))).---------)))))))))..................((((.....))))((((((((..........)))))))).... ( -26.60) >DroEre_CAF1 269343 109 + 1 AUGAUUUCAAACGAGACAUAUUUAGAGAAAUAAGAAAAACCAAUUUGCGCUCUUCCCUCUUAGCUUCUCCACCAAGGAGGCGGCCACCCACGCCAUCGUGGCCGUUAAC (((.((((....))))))).....(((((.(((((......................)))))..))))).........(((((((((..........)))))))))... ( -23.15) >DroYak_CAF1 268887 94 + 1 AUGAU------------AUAU---GAACAAUAAGAAAUACCAAUUUGUUCUCUUACCUCUCAGCUUCUCCACCAAGGAGGCGGCCACACACGCCAUCGUGGCCGUUAAC .....------------....---((((((..............))))))................((((.....))))((((((((..........)))))))).... ( -23.24) >DroAna_CAF1 267373 87 + 1 --GA------ACAUAAUCUAUU---A-UAA----------UAAUUCUUUCUGUGCAUCCAAAGCUUCUCCACCAAGGAGGCCGCCACCCACGCCAUCGUGGCCGUUAAC --.(------((..........---.-...----------......................((((((.......)))))).(((((..........))))).)))... ( -13.50) >consensus ACGAAUUUAAACCUGAUAUAUU___AAGAA_________UAAAUUUGUUCUCUCACCUCUCAGCUUCUCCACCAAGGAGGCGGCCACCCACGCCAUCGUGGCCGUUAAC ..................................................................((((.....))))((((((((..........)))))))).... (-16.62 = -16.95 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:47 2006