| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,061,325 – 24,061,426 |
| Length | 101 |
| Max. P | 0.558694 |
| Location | 24,061,325 – 24,061,426 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 87.29 |
| Mean single sequence MFE | -21.85 |
| Consensus MFE | -15.66 |
| Energy contribution | -15.48 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.558694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24061325 101 - 27905053 AGAUUGCUCCAUUAUUAGAUCGAUUGCCUGAUCGCUCAUUCUACCGUGAGGUUCUUAAGAAAUAUGGGAGCACACAAAAUAUCAAAUUCUAAUGAGAAUAA ....((((((.......((.(((((....))))).)).(((((((....))).....)))).....)))))).............(((((....))))).. ( -24.20) >DroSec_CAF1 256382 101 - 1 AGAUUGCUCCAUUAUUUGAUCGAUUGCCUGAUCGCUUAUUCUACGGUGGGGUACUUCAGAAAUAUGGGAGCACACAAAAUAUAAAAUUCUAAUAUGAAUAA ....((((((....(((((.....(((((.((((.........)))).)))))..)))))......)))))).............((((......)))).. ( -23.20) >DroEre_CAF1 267951 101 - 1 AGAUUGCUCCAUUAUUUGAUCGAUUGCCUGAUCGUUCACUGUAUGGUGGGGUACUUAAGUAAUAUGGGAGUACAAAAAAUAUAAACUUAUAAUGAUAAUAA ....(((((((((((((((.....(((((.(((((.......))))).))))).)))))))))...))))))............................. ( -20.80) >DroYak_CAF1 267456 101 - 1 AGAUUGCUCCAUUAUUUGAUCGAUUGCCUGAUCGCUCAUUGUACGGCGGGGUACUUUGGAAAUAUGGAAGCACACAAAAUAUAAAAUUAUAAAAAGAACAA ....((((((((.(((((((((......)))))..(((..((((......))))..))))))))))).))))............................. ( -19.20) >consensus AGAUUGCUCCAUUAUUUGAUCGAUUGCCUGAUCGCUCAUUCUACGGUGGGGUACUUAAGAAAUAUGGGAGCACACAAAAUAUAAAAUUAUAAUAAGAAUAA ....((((((.......(((((......))))).((((((....))))))................))))))............................. (-15.66 = -15.48 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:46 2006