Locus 8966

Sequence ID 3R_DroMel_CAF1
Location 24,060,688 – 24,060,779
Length 91
Max. P 0.527854
window14372

overview

Window 2

Location 24,060,688 – 24,060,779
Length 91
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 86.40
Mean single sequence MFE -29.35
Consensus MFE -24.92
Energy contribution -24.24
Covariance contribution -0.67
Combinations/Pair 1.36
Mean z-score -1.50
Structure conservation index 0.85
SVM decision value -0.01
SVM RNA-class probability 0.527854
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24060688 91 - 27905053
AAAUGGAGAGCGCAAUUAGCUAAGAGCCCAU-UCC-AUUUACGCGGGCUUGUCUAGCCGCUUAAGCCGCUUACGGCGGCUGCUAAGUCGCCCU
....((.(((((......((((.((((((..-...-........))))))...)))))))))...))......(((((((....))))))).. ( -31.52)
>DroSec_CAF1 255762 91 - 1
AAAUGGAGAGCGCAAUUAGCUAAGAGCCCAU-UCC-AUUUACGCGGGCUUGUCUAGCCGCUUAAGCCGCUUACGGCGGCUGCUAAGUCGCCUU
.....(((.(((...(((((...((((((..-...-........))))))....(((((((((((...)))).))))))))))))..)))))) ( -32.12)
>DroSim_CAF1 253843 91 - 1
AAAUGGAGAGCGCAAUUAGCUAAGAGCCCAU-UCC-AUUUACGCGGGCUUGUCUAGCCGCUUAAGCCGCUUACGGCGGCUGCUAAGUCGCCUU
.....(((.(((...(((((...((((((..-...-........))))))....(((((((((((...)))).))))))))))))..)))))) ( -32.12)
>DroEre_CAF1 267341 91 - 1
AAAUGGAGAGCGCAAUUAGCUAAGAGCCCAU-UCC-AUUUACGCGGGCUUGUCUAGCCGCUUAAGCCGCUUACGGCGGCUGCUAAGUCGCCUC
.....(((.(((...(((((...((((((..-...-........))))))....(((((((((((...)))).))))))))))))..)))))) ( -33.32)
>DroWil_CAF1 307691 85 - 1
AAAUGGAGAG--CAAUUAGCUAAAAGCCUAGCGCC-AUUUGCUUGCGUUUGUCUAGCCGUUUAAGCCGCUUAAAACGGCCGCUAAGAC-----
(((((..(((--(((...((((......))))...-..)))))).)))))((((.((((((((((...))).))))))).....))))----- ( -22.60)
>DroAna_CAF1 265356 92 - 1
AAAUGGGAAGAGCAAUUAGCUAAAAGCCCAU-CGCAAUUUACGCGGGUUUGUCUAGCCGCCUAAGCCGCUUACGACGGCUGUUAAGUCUUGGC
..(((((...(((.....))).....)))))-(((.......)))((((.....))))(((..((((((....).)))))..........))) ( -24.40)
>consensus
AAAUGGAGAGCGCAAUUAGCUAAGAGCCCAU_UCC_AUUUACGCGGGCUUGUCUAGCCGCUUAAGCCGCUUACGGCGGCUGCUAAGUCGCCUU
.........(((...(((((...((((((...............))))))....(((((((((((...)))).))))))))))))..)))... (-24.92 = -24.24 +  -0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:45 2006