| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,060,176 – 24,060,284 |
| Length | 108 |
| Max. P | 0.704287 |
| Location | 24,060,176 – 24,060,284 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.39 |
| Mean single sequence MFE | -18.64 |
| Consensus MFE | -14.39 |
| Energy contribution | -14.25 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.19 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.704287 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24060176 108 + 27905053 CGCACGAAUUACCUUUUAUGCGAAAUUGAAAUUAUAAUUUGUGCACGGCCUUGUAAAUGCUACGUAUAUAGCCAGCCCCUUGCCUCC---------UCCUCCUACCACCCACUUUG-C .((((((((((..(((((........)))))...))))))))))..(((.........((((......)))).........)))...---------....................-. ( -19.07) >DroEre_CAF1 266837 103 + 1 CGCACGAAUUACCUUUUAUGCGAAAUUGAAAUUAUAAUUUGUGCACGGCCUUGUAAAUGCUACGUAUAUAGCCCGCCCUU-CCCUCC---------ACC----GCCGCCCACUUCC-C .((((((((((..(((((........)))))...)))))))))).((((..((.....((((......))))........-.....)---------)..----)))).........-. ( -18.07) >DroWil_CAF1 307350 92 + 1 CGCACGAAUUACCUUUUAUGCGAAAUUGAAAUUAUAAUUUGUGCAUGGCCUUGUAAAUGUUACGUAUGCGCCCAGUCUUACAAC-------------------------UACUUCA-C .((((((((((..(((((........)))))...))))))))))..((((.((((.....))))...).)))............-------------------------.......-. ( -17.10) >DroYak_CAF1 266265 104 + 1 CGCACGAAUUACCUUUUAUGCGAAAUUGAAAUUAUAAUUUGUGCACGGCCUUGUAAAUGCUACGUAUAUAGCCUGCCCUUUUCCUCU---------UCC----ACCGCCCACUUUC-U .((((((((((..(((((........)))))...))))))))))..(((..((((.........))))..)))..............---------...----.............-. ( -17.50) >DroAna_CAF1 264808 117 + 1 CGCACGAAUUACCUUUUAUGCGAAAUUGAAAUUAUAAUUUGUGCACGGCCUUGUAAAUGCUACGUAUAGGACUUGUCCCAUUCCGCUCUCCAACUUUCCUCCAGCCACACAUUUUC-C .((((((((((..(((((........)))))...))))))))))..(((...(((.....))).....(((....))).........................)))..........-. ( -20.30) >DroPer_CAF1 275891 95 + 1 CGCACGAAUUACCUUUUAUGCGAAAUUGAAAUUAUAAUUUGUGCACGGCCUUGUAAAUGGUACGUAUAGGAAAAGGCACUC-----------------------CCAUCAACGUUCCU .((((((((((..(((((........)))))...))))))))))((((((........))).)))..(((((..((.....-----------------------)).......))))) ( -19.80) >consensus CGCACGAAUUACCUUUUAUGCGAAAUUGAAAUUAUAAUUUGUGCACGGCCUUGUAAAUGCUACGUAUAUAGCCAGCCCCUUUCCUC__________UCC_____CCACCCACUUUC_C .((((((((((..(((((........)))))...))))))))))..(((.(((((.(((...))).)))))...)))......................................... (-14.39 = -14.25 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:44 2006