Locus 8964

Sequence ID 3R_DroMel_CAF1
Location 24,054,453 – 24,054,544
Length 91
Max. P 0.500000
window14370

overview

Window 0

Location 24,054,453 – 24,054,544
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 93.11
Mean single sequence MFE -25.58
Consensus MFE -22.01
Energy contribution -21.85
Covariance contribution -0.16
Combinations/Pair 1.11
Mean z-score -1.39
Structure conservation index 0.86
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24054453 91 - 27905053
AUCUGGCAUUUUGGCAUUGGGUUUAUGCAAAGCCAUGGCGAUUGGCAAAAUUUCAUGCGCCGGCGAACGGAAGUGCUGAAUGAAAGAAAAC
.(((..((((...((((..(((((.(((...((....)).....))))))))..))))..((((..((....))))))))))..))).... ( -24.90)
>DroSec_CAF1 249630 91 - 1
AUCUGGCAUUUUGGCAUUGGGUUUAUGCAAAGCCAUGGCGAUUGGCAAAAUUUCAUGCGCCGGCGAACGGAAGUGCUGAAUGAAAGAAAAC
.(((..((((...((((..(((((.(((...((....)).....))))))))..))))..((((..((....))))))))))..))).... ( -24.90)
>DroSim_CAF1 247693 91 - 1
AUCUGGCAUUUUGGCAUUGGGCUUAUGCAAAGCCAUGGCGAUUGGCAAAAUUUCAUGCGCCGGCGAACGGAAGUGCUGAAUGAAAGAAAAC
.(((..(((.(..(((((.(((((.....))))).(((((..(((.......)))..))))).........)))))..))))..))).... ( -26.40)
>DroEre_CAF1 261191 91 - 1
AUCUGGCAUUUUGGCAUUGGGUUUAUGCAAAGCCAUGGCGAUUGGCAGAAUUUCAUGCGCCGGCAAACGGAAGUGCUGAAUGAAAGAAAAC
.((((.((..(((.(((.((.(((....))).))))).))).)).)))).((((((....((((..((....)))))).))))))...... ( -26.30)
>DroYak_CAF1 260389 91 - 1
AUCUGGCAUUUUGGCAUUGGGUUUAUGCAAAGCCAUGGCGAUUGGCAAAAUUUCAUGCGCCGGCAAACGGAAGUGCUGAAUGAAAGAAAAC
.(((..((((...((((..(((((.(((...((....)).....))))))))..))))..((((..((....))))))))))..))).... ( -24.90)
>DroAna_CAF1 258946 90 - 1
CUUUGGCAUUUGUGCAUUGGCUCU-CGCAUUUCCCAGGCGAUUGGAAAAAUUUCAUGCGCCGGCAACCGGAAGUGCUGAAUGAAAGAAAAC
.(((..((((((.((....)).).-.((((((((..((((..((((.....))))..))))(....).)))))))).)))))..))).... ( -26.10)
>consensus
AUCUGGCAUUUUGGCAUUGGGUUUAUGCAAAGCCAUGGCGAUUGGCAAAAUUUCAUGCGCCGGCAAACGGAAGUGCUGAAUGAAAGAAAAC
.(((..(((((((((.(((........))).)))).((((..(((.......)))..))))((((..(....))))))))))..))).... (-22.01 = -21.85 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:44 2006