Locus 8962

Sequence ID 3R_DroMel_CAF1
Location 24,047,455 – 24,047,549
Length 94
Max. P 0.919918
window14365

overview

Window 5

Location 24,047,455 – 24,047,549
Length 94
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 73.43
Mean single sequence MFE -16.23
Consensus MFE -1.22
Energy contribution -0.66
Covariance contribution -0.56
Combinations/Pair 1.50
Mean z-score -1.92
Structure conservation index 0.08
SVM decision value 1.13
SVM RNA-class probability 0.919918
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24047455 94 - 27905053
UCAUCCAUUCUCCAUUUUUUUUUUUCAAUCCAGCACUGGAAAAAAAUAGUUUGCAAG----GGUAUGAGCC-AAAACUGGUACCCGUAUAACAAAGAAA
.......((((......((((((((((.........))))))))))..(((.....(----(((((.((..-....)).))))))....)))..)))). ( -18.90)
>DroSec_CAF1 242661 91 - 1
UCAUCCAUUCCCCAUUUC---UUUUCAAUCCAACACUGGAAA-AAAUAGUUAGGAAG----GGGAUGAGCAGAAAACCGGUAUACGUAUAACAAAGAAA
((((((.((((..(((..---((((...((((....))))))-))..)))..)))).----.)))))).........((.....))............. ( -16.60)
>DroSim_CAF1 240359 91 - 1
UCAUCCAUUCCCAAUUUC---UUUUCAAUCCAACACUGGAAA-AAAUAGUUCGGAAG----GGGAUGAGCAGAAAACCGGCAUACGUAUAACAAAGAAA
((((((.((((.((((..---((((...((((....))))))-))..)))).)))).----.))))))((.(.....).)).................. ( -19.00)
>DroEre_CAF1 254192 77 - 1
UCAUCCAUUCUCCAUUUC---UUUUCAAUCCAGCACUGAAAA-AAAAAGCUAA---------------GCUAAAAACUC-UUCAC--UUUACGAAGAGA
..............(((.---((((((.........))))))-.)))(((...---------------))).....(((-(((..--.....)))))). (  -9.40)
>DroYak_CAF1 253279 94 - 1
UCAUCCAUUCUCCAUUUC---UUUUCAAUCCAGCACUGAGAG-AAAUAGCUAGCAUCCUCUUGCUUGUGCUGAAAACUC-UUUACUCUUUACGAAGAGU
..................---.........((((((.(((((-..............)))))....))))))...((((-(((.........))))))) ( -17.24)
>consensus
UCAUCCAUUCUCCAUUUC___UUUUCAAUCCAGCACUGGAAA_AAAUAGUUAGCAAG____GGGAUGAGCAGAAAACUGGUAUACGUAUAACAAAGAAA
.....................((((((.........))))))......................................................... ( -1.22 =  -0.66 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:39 2006