| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,046,407 – 24,046,516 |
| Length | 109 |
| Max. P | 0.746335 |
| Location | 24,046,407 – 24,046,516 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 85.44 |
| Mean single sequence MFE | -25.77 |
| Consensus MFE | -21.93 |
| Energy contribution | -21.27 |
| Covariance contribution | -0.67 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.746335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24046407 109 - 27905053 GCCAAAUUGUAAAUAUUUUUGUCGGCCACGUAGCGGCGCAGGAGAAAAUAUUGCAUUUCUCGCUUGGCAUAAUAAACGAUGUGCCGGCAAAAA--ACGAAAAGC--AUA--AAAA-- ((....((((.....((((((((((((((((....((.(((((((((........)))))).).)))).......))).)).)))))))))))--))))...))--...--....-- ( -27.50) >DroVir_CAF1 264218 108 - 1 GCCGAAUUGUAAAUAUUUUUGUCGGCCACGUAGCGGCACAGGAGAAAAUAUUGCAUUUUUCGCUUGGCAUAAUAAACGAUGUGCCAAAAAAA-CC-ACAAAACC--CUCGAA----- ((.(((.(((((.(((((((..(.(((.......)))...)..))))))))))))...)))))((((((((........)))))))).....-..-........--......----- ( -25.00) >DroWil_CAF1 293065 112 - 1 GCCAAAUUGUAAAUAUUUUUGUCGACCACGUAGUGGUGCAGGAGAAAAUAUUGCAUUUUUCGCUUGGCAUAAUAAACGAUGUGCCAAAGAAGC-CAACAAAACC--ACC-AGAAAA- ((.....(((((.(((((((..(.(((((...)))))...)..))))))))))))...(((..((((((((........)))))))).)))))-..........--...-......- ( -24.10) >DroMoj_CAF1 277282 109 - 1 GCCAAAUUGUAAAUAUUUUUGUCGGCCACGUAGCGGCACAGGAGAAAAUAUUGCAUUUUUCGCUUGGCAUAAUAAACGAUGUGCCAAAAAAAGCC-ACAAAAAC--CUCGAA----- ((.(((.(((((.(((((((..(.(((.......)))...)..))))))))))))..))).))((((((((........))))))))........-........--......----- ( -23.80) >DroAna_CAF1 251073 113 - 1 GCCAAAUUGUAAAUAUUUUUGUCGGCCACGUAGCGGCGCAGGAGAAAAUAUUGCAUUUCUCGCUUGGCAUAAUAAACGAUGUGCCGACAAAAA--GAAAAAAACGCCCA--AAAAAA ...............((((((((((((((((....((.(((((((((........)))))).).)))).......))).)).)))))))))))--..............--...... ( -27.10) >DroPer_CAF1 261527 114 - 1 GCCAAAUUGUAAAUAUUUUUGUCGGCCACGUAGCGGCGCAGGAGAAAAUAUUGCAUUUCUCGCUUGGCAUAAUAAACGAUGUGCCGACAAAAAAAAAAAAUACC--AUCCAGAAAG- ...............((((((((((((((((....((.(((((((((........)))))).).)))).......))).)).)))))))))))...........--..........- ( -27.10) >consensus GCCAAAUUGUAAAUAUUUUUGUCGGCCACGUAGCGGCGCAGGAGAAAAUAUUGCAUUUCUCGCUUGGCAUAAUAAACGAUGUGCCAAAAAAAA_CAACAAAACC__AUC_AAAAA__ ((.....(((((.(((((((..(.(((.......)))...)..))))))))))))......))((((((((........)))))))).............................. (-21.93 = -21.27 + -0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:38 2006