Locus 8960

Sequence ID 3R_DroMel_CAF1
Location 24,040,336 – 24,040,431
Length 95
Max. P 0.642542
window14363

overview

Window 3

Location 24,040,336 – 24,040,431
Length 95
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 83.59
Mean single sequence MFE -30.67
Consensus MFE -21.69
Energy contribution -21.33
Covariance contribution -0.36
Combinations/Pair 1.17
Mean z-score -2.11
Structure conservation index 0.71
SVM decision value 0.23
SVM RNA-class probability 0.642542
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24040336 95 - 27905053
UUGCCGGCAUGUAGUUGACAUCAUUGAUUGAUUUAGCUGUCAAUUGCAUAAUCACUCAAGCGAUAUUGUUCGACCGCUGGGUUGUAGU-------------CAGCCUC
....(((((((((((((((((((.....)))......))))))))))))...........(((......)))...))))(((((....-------------))))).. ( -26.80)
>DroVir_CAF1 257517 95 - 1
UUGUCGGCAUGUAGUUGACAUCAUUGAUUGAUUUAGCUGUCAAUUGCAUAAUCACUCAAGCGUUAUUGUUCAACUGCUCAGCCGACGC-------------CUGCUGG
..((((((..((((((((((.(.((((.(((((..((........))..))))).))))..)....)).))))))))...))))))..-------------....... ( -31.30)
>DroPse_CAF1 253454 108 - 1
UCGCCGGCAUGUAGUUGACAUCAUUGAUUGAUUUAGCUGUCAAUUGCAUAAUCACUCAAGCGUUAUUGUUGGACCGCUCGCCCGGAGCCAUGGCCGGAGCCCAGCCUC
.....((((((((((((((((((.....)))......)))))))))))).....(((.((((....))))((.((((((.....))))...)))).)))....))).. ( -30.60)
>DroGri_CAF1 213806 95 - 1
UUGUCGGCAUGUAGUUGACAUCAUUGAUUGAUUUAGCUGUCAAUUGCAUAAUCACUCAAGCGUUAUUGUUCAACUGCUCAGCCGACGC-------------CUACUAG
..((((((..((((((((((.(.((((.(((((..((........))..))))).))))..)....)).))))))))...))))))..-------------....... ( -31.30)
>DroMoj_CAF1 268422 95 - 1
UUGUCGGCAUGUAGUUGACAUCAUUGAUUGAUUUAGCUGUCAAUUGCAUAAUCACUCAAGCGUUAUUGUUCAACUGCUCAGCCGACGC-------------CUGCUGG
..((((((..((((((((((.(.((((.(((((..((........))..))))).))))..)....)).))))))))...))))))..-------------....... ( -31.30)
>DroPer_CAF1 254817 108 - 1
UGGCCGGCAUGUAGUUGACAUCAUUGAUUGAUUUAGCUGUCAAUUGCAUAAUCACUCAAGCGUUAUUGUUGGACCGCUCGCCCGGAGCCAUGGCCGGAGCCCAGCCUC
.((((((((((((((((((((((.....)))......))))))))))))(((.((......)).)))))))).))(((.((((((........)))).))..)))... ( -32.70)
>consensus
UUGCCGGCAUGUAGUUGACAUCAUUGAUUGAUUUAGCUGUCAAUUGCAUAAUCACUCAAGCGUUAUUGUUCAACCGCUCAGCCGAAGC_____________CAGCCUC
...((((((((((((((((((((.....)))......)))))))))))).........((((............))))..)))))....................... (-21.69 = -21.33 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:37 2006