Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,026,871 – 3,026,967 |
Length | 96 |
Max. P | 0.680134 |
Location | 3,026,871 – 3,026,967 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 76.71 |
Mean single sequence MFE | -35.64 |
Consensus MFE | -17.94 |
Energy contribution | -18.42 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.32 |
Mean z-score | -1.89 |
Structure conservation index | 0.50 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.680134 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3026871 96 + 27905053 GAACCGAGAGAAGGAUGUUUUGGCCCCCAAGCCUGUGCAUCCGCGCUCCUUGAGAUUUCAUGGAUUCUUUGGCAUGUCGUACGUGCAUCAGCAUGU ((.((.((((((((((((...(((......)))...))))))....(((.((......)).)))))))))))....))..((((((....)))))) ( -30.10) >DroVir_CAF1 62497 96 + 1 AGCACCCGAACGAGAUGUAUUGGCGCCCAAGCCAGUGCAUCCUCGUGCCUUGAGAUUCCAUGGACUCUUUGGUAUGUCCUAUGUGCGCCAGCAUGU .((((....(((((((((((((((......)))))))))).)))))(((..((((.((....)).)))).))).........)))).......... ( -36.30) >DroPse_CAF1 14880 90 + 1 GG------ACAAGGAUGUCCUGGCCCCCAAGCCAGUGCAUCCGCGUGCCUUGCGCUUCCACGGAUUUUUCGGCAUGUCGUAUGUCCGCCAGCACGU ((------(((.(((((..(((((......)))))..)))))(((((((.......((....))......)))))))....))))).......... ( -37.32) >DroMoj_CAF1 30907 96 + 1 GUCGAAUGAUCGGGAUCCUCUGGCGCCGAAGCCCGUGCAUCCGCAGGCCUUGCGGUUCCAUGGACUCUUCGGCAUGUCCUAUGUGCGUCAGCACGU ((((...(((....)))...))))(((((((.(((((...((((((...))))))...)))))...))))))).......((((((....)))))) ( -36.60) >DroAna_CAF1 15507 96 + 1 GAACCGGGAGAAGGAUGUCCUGGCACCCAAGCCAGUGCAUCCUCGCUCUCUGCGCUUCCAUGGAUUCUUCGGCAUGUCCUACGUCCGGCAACAUGU ((((((((((.((((((..(((((......)))))..))))))(((.....))))))))..)).)))....((((((((.......))..)))))) ( -36.20) >DroPer_CAF1 14909 90 + 1 GG------ACAAGGAUGUCCUGGCCCCCAAGCCAGUGCAUCCGCGUGCCUUGCGCUUCCACGGAUUUUUCGGCAUGUCGUAUGUCCGCCAGCACGU ((------(((.(((((..(((((......)))))..)))))(((((((.......((....))......)))))))....))))).......... ( -37.32) >consensus GG__C__GACAAGGAUGUCCUGGCCCCCAAGCCAGUGCAUCCGCGUGCCUUGCGCUUCCAUGGAUUCUUCGGCAUGUCCUAUGUCCGCCAGCACGU ............((((((.(((((......))))).))))))(((.(((.......((....))......))).)))................... (-17.94 = -18.42 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:53 2006