| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,031,665 – 24,031,768 |
| Length | 103 |
| Max. P | 0.537358 |
| Location | 24,031,665 – 24,031,768 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.79 |
| Mean single sequence MFE | -28.32 |
| Consensus MFE | -19.55 |
| Energy contribution | -20.22 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537358 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24031665 103 + 27905053 AAAUCAAAAUCGCAUUCAAAUGCGACGCGGCGUGCAGCGGAAGUUAAUGCGAAAAACUUUUGCCCCAAAACGCG-CACAAUCAGUCAAGCAU-CAUCUCCUUGGC--------------- .........((((((....))))))((((...((..(((((((((.........)))))))))..))...))))-........((((((...-......))))))--------------- ( -26.50) >DroPse_CAF1 243985 115 + 1 AAAUCAAAAUCGCAUUCAAAUGCGACGCGGCGUGCAGCGGAAGUUAAUGCGAAAAACUUUUGCCCCAAAACGCGGCACAAUCAGUCAAGCAUCUCUCUCU----CUUCGGCUCCACG-CU .........((((((....))))))...((((((.(((.((((...((((..........((((.(.....).))))...........))))........----)))).))).))))-)) ( -31.90) >DroWil_CAF1 276355 108 + 1 AAAUCAAAAUCGCAUUCAAAUGCAACGCGGCGUGCAGCGGAAGUUAAUGCGAAAAACUUUUCACCCCAAACGCG-CAAAAUCAGUCAAGCUUUUAGCUAU----CUUCGUCUC------- ...........((((....))))..((((((((..(((....))).))))((((....))))........))))-............(((.....)))..----.........------- ( -21.10) >DroYak_CAF1 236996 103 + 1 AAAUCAAAAUCGCAUUCAAAUGCGACGCGGCGUGCAGCGGAAGUUAAUGCGAAAAACUUUUGCCCCAAAACGCG-CACAAUCAGUCAAGCAU-CAUCUCCUUGGC--------------- .........((((((....))))))((((...((..(((((((((.........)))))))))..))...))))-........((((((...-......))))))--------------- ( -26.50) >DroAna_CAF1 236768 115 + 1 AAAUCAAAAUCGCAUUCAAAUGCGACGCGGCGUGCAGCGGAAGUUAAUGCGAAAAACUUUUGCCCCAAAACGCG-CACAAUCAGUCAAGCA----UCUCCUUGGCUUCUCCUCCACUCCU .........((((((....))))))((((...((..(((((((((.........)))))))))..))...))))-.......(((((((..----....))))))).............. ( -29.30) >DroPer_CAF1 245405 111 + 1 AAAUCAAAAUCGCAUUCAAAUGCGACGCGGCGUGCAGCGGAAGUUAAUGCGAA-AACUUUUGCCCCA-AACGCGGCACA-UCAGUAAAGCAU-UCUCUCU----CUUCGGCUCCACG-CU .........((((((....))))))...((((((.(((.((((..(((((...-.(((..((((.(.-...).))))..-..)))...))))-)......----)))).))).))))-)) ( -34.60) >consensus AAAUCAAAAUCGCAUUCAAAUGCGACGCGGCGUGCAGCGGAAGUUAAUGCGAAAAACUUUUGCCCCAAAACGCG_CACAAUCAGUCAAGCAU_UAUCUCC____CUUCG_CUC_______ .........((((((....))))))((((...((..(((((((((.........)))))))))..))...)))).............................................. (-19.55 = -20.22 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:36 2006