Locus 8958

Sequence ID 3R_DroMel_CAF1
Location 24,031,191 – 24,031,286
Length 95
Max. P 0.515404
window14361

overview

Window 1

Location 24,031,191 – 24,031,286
Length 95
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 81.18
Mean single sequence MFE -19.45
Consensus MFE -12.87
Energy contribution -13.49
Covariance contribution 0.61
Combinations/Pair 1.25
Mean z-score -1.37
Structure conservation index 0.66
SVM decision value -0.04
SVM RNA-class probability 0.515404
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24031191 95 + 27905053
GAUUUUGGUUUGCUGUCUACCAUCGCCA-------GACUGCAGACUC---C----UUUGCCACCUGGCCACGGCGUCAUUACGCUGAUGCUCCUCCUUCUCUCCAUUUC
((....((...((...........((((-------(...(((((...---.----)))))...)))))..((((((....))))))..)).))....)).......... ( -23.50)
>DroSec_CAF1 226463 92 + 1
GAUUUUGGUUUGCUGUCUACCAUCGCCA-------GACUACAGACUC---C----UUUGCCACCUGGCCACGACGUCAUUACGCUGAUGCUC---CUUCUCUCCAUUUC
(((.((((((((..((((.........)-------)))..)))))..---.----...(((....)))..))).))).....((....))..---.............. ( -16.40)
>DroSim_CAF1 223995 92 + 1
GAUUUUGGUUUGCUGUCUACCAUCGCCA-------GACUGCAGACUC---C----UUUGCCACCUGGCCACGACGUCAUUACGCUGAUGCUC---CUUCUCUCCAUUUC
(((.(((((((((.((((.........)-------))).))))))..---.----...(((....)))..))).))).....((....))..---.............. ( -19.70)
>DroEre_CAF1 237872 99 + 1
GAUUUUGGUUUGCUGUCUACCAUCUCCAGACUCGAGACUGCAGACUC---C----UUUGCCACCUGGUCGCGAUGUCAUUACGCUGAUAUUC---CUUCUAUCCAUUUC
......(((((((.((((....((....))....)))).))))))).---.----...(((....))).(.(((((((......))))))).---)............. ( -20.10)
>DroYak_CAF1 236484 99 + 1
GAUUUUGGUUUGCUGUCUACCAUCUUCAGACUCCAGACUGCAGACUC---C----AUUGCCACCUGGCCACGACGUCAUUACGCUGAUAUUC---CUUCUAUCCAUUUC
(((.(((((((((.((((....((....))....)))).))))))..---.----...(((....)))..))).)))...............---.............. ( -19.30)
>DroAna_CAF1 236235 90 + 1
GAUUUUGGUUUGCUGUCUACCAUCUUCA-------GACUGCGGAGUUUUCCUCCGAUUUCCCCCUGC---CGACAUCAUUACGUUGAUUUUU---------CCCAUUUU
(((.(((((..((.((((.........)-------))).))((((.....))))...........))---))).)))...............---------........ ( -17.70)
>consensus
GAUUUUGGUUUGCUGUCUACCAUCGCCA_______GACUGCAGACUC___C____UUUGCCACCUGGCCACGACGUCAUUACGCUGAUGCUC___CUUCUCUCCAUUUC
......(((((((.(((..................))).)))))))............(((....)))...(((((((......))))))).................. (-12.87 = -13.49 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:35 2006