| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,022,611 – 24,022,712 |
| Length | 101 |
| Max. P | 0.524555 |
| Location | 24,022,611 – 24,022,712 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 74.28 |
| Mean single sequence MFE | -23.30 |
| Consensus MFE | -11.31 |
| Energy contribution | -11.75 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.49 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24022611 101 - 27905053 ACCUAAUAAGCUUUUGUGCAAUUGCAAGCCAUUGUGCUGCAGCUAAAGCCCGGCC-----AACCAACAGAAAGCUAAUUCAAACACCUGCCACAAAAGGUA------------GGAA-A ........(((((((.(((....))).....(((.((((..((....)).)))))-----))......)))))))..........((((((......))))------------))..-. ( -26.20) >DroVir_CAF1 239419 95 - 1 AACUAAUAAGCUUUUGUGCAAUUGCCAGCAGUCGCGGU-----CUUUU-CCUGCC-----AACCAGAUGAAAGCUAAUUCCAACACAUGGCACAAAAGGUG------------GCAA-A ........((((((..(((.((((....)))).))(((-----.....-...)))-----......)..))))))............((.(((.....)))------------.)).-. ( -20.40) >DroGri_CAF1 194844 96 - 1 AACUAAUAAGCUUUUGUGCAAUUGCCAGCAGUCGCGGU-----UUUUUUUCCGCC-----AACCAACUGAAAGCUAAUUCCAACACAUGGCACAAAAGGUG------------GCAA-A ..........(((((((((....((...((((.((((.-----.......)))).-----.....))))...))......((.....)))))))))))...------------....-. ( -21.30) >DroWil_CAF1 266984 85 - 1 ACCUAAUAAGCUUUUGUGCAACUGCAAGCCGUUGUGUUCCA-----------ACC-----GACUCGCAGAAAGCUAAUUCAAAUACCUGGCACAAAAGGUG------------------ ..........(((((((((..((((.(((.((((.....))-----------)).-----).)).))))..........((......)))))))))))...------------------ ( -21.80) >DroAna_CAF1 227766 100 - 1 ACCUAAUAAGCUUUUGUGCAAUUGCAAGCCAUUGUGCUGCAGCUU-UGCCCAGCC-----AACCCACAGAAAGCUAAUUCAAACACCUGGCACAAAAGGUA------------GGAA-A .((((.....(((((((((....(((.((......)))))(((((-(........-----.........))))))..............))))))))).))------------))..-. ( -24.23) >DroPer_CAF1 235559 119 - 1 ACCUAAUAAGCUUUUGUGCAAUUGCAAGCCAUUGUGCUGCCGCUUUGCCCCGGCCAAUCCAACCCACAGAAAGCUAAUUCAAACACCUGCCACAAAAGGUAUACGUAUAUAUGGGAAAA .((((...((((((((..((((.(....).))))..).((((........))))..............))))))).........((((........))))...........)))).... ( -25.90) >consensus ACCUAAUAAGCUUUUGUGCAAUUGCAAGCCAUUGUGCUGCA__UUUUGCCCGGCC_____AACCAACAGAAAGCUAAUUCAAACACCUGGCACAAAAGGUA____________GGAA_A ..........(((((((((....((((....)))).................................(((......))).........)))))))))..................... (-11.31 = -11.75 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:32 2006