| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,014,406 – 24,014,513 |
| Length | 107 |
| Max. P | 0.665916 |
| Location | 24,014,406 – 24,014,513 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 89.27 |
| Mean single sequence MFE | -19.41 |
| Consensus MFE | -17.09 |
| Energy contribution | -16.90 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665916 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24014406 107 + 27905053 UCGUUGUAUUUGGUUGCUAAACAACUUAAGAAGUUGACACUUGCCAGGCAAAAUAUUUUCAUCAACAACUCAGC-AAAAAUUAGCAAGUGUCAAAGAUAAAUAAAAGA ((....((((((((((.....))))........(((((((((((...((.......................))-........)))))))))))...))))))...)) ( -18.20) >DroPse_CAF1 224702 108 + 1 UCUCUAUAUUUGGUUGCUAAACAACUUAGGAAGUUGACACUUGCCAGGGAAAAUAUUUUCAUCAACAACUCGACGAAAAAUUAGCAAGUGUCAAAGAUAAAUAAAACU ......((((((((((.....))))........(((((((((((.((........(((((.((........)).))))).)).)))))))))))...))))))..... ( -20.70) >DroGri_CAF1 185986 106 + 1 UC-CAAUGUUUGGUUGCUAAACAACUUACGAAGUUGACACUGGCACGCAACAAUAUUUUCAUCAGCAACACGAC-UAAAAUUAGCAAGUGUCAAAGAUAAAUAAGAGA ..-...(((((((...))))))).((((.....((((((((.((..........(((((..((........)).-.)))))..)).)))))))).......))))... ( -16.50) >DroWil_CAF1 258663 106 + 1 UU-CUCUGUUUGGUUGCUAAACAACUUAAGAAGUUGACACUUGCAUGGGAAAAUAUUUUCAUCAACAACUCGAC-AAAAAUUAGUAAGUGUCAAAGAUAAAUAAAAGU ..-.(((....(((((.....)))))..)))..(((((((((((.((..((....))..))((........)).-........))))))))))).............. ( -21.50) >DroAna_CAF1 219832 107 + 1 UUUACGUAUUUGGUUGCUAAACAACUUAAGAAGUUGACACUUGCCAGGCAAAAUAUUUUCAUCAACAACUCAAC-AAAAAUUAGCAAGUGUCAAAGAUAAAUAAAAGA ((((..((((((((((.....))))).......(((((((((((..............................-........))))))))))))))))..))))... ( -18.86) >DroPer_CAF1 226508 108 + 1 UCUCUAUAUUUGGUUGCUAAACAACUUAGGAAGUUGACACUUGCCAGGGAAAAUAUUUUCAUCAACAACUCGACGAAAAAUUAGCAAGUGUCAAAGAUAAAUAAAACU ......((((((((((.....))))........(((((((((((.((........(((((.((........)).))))).)).)))))))))))...))))))..... ( -20.70) >consensus UCUCUAUAUUUGGUUGCUAAACAACUUAAGAAGUUGACACUUGCCAGGGAAAAUAUUUUCAUCAACAACUCGAC_AAAAAUUAGCAAGUGUCAAAGAUAAAUAAAAGA ......((((((((((.....))))........(((((((((((.......................................)))))))))))...))))))..... (-17.09 = -16.90 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:27 2006