| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,995,962 – 23,996,058 |
| Length | 96 |
| Max. P | 0.649321 |
| Location | 23,995,962 – 23,996,058 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 80.99 |
| Mean single sequence MFE | -16.73 |
| Consensus MFE | -10.65 |
| Energy contribution | -10.68 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649321 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23995962 96 - 27905053 GCUGAGUGGCUGCCCC-UGCCAC--UCAUCUCACGUGUGUAUAAUUAAAAUAAUAGCAGCAA-AGCCUAGUUUUAUUAUUAAUUAUGCAAGAACACACA----------A ..((((((((......-.)))))--)))......((.((((((((((..(((((((.(((..-......))))))))))))))))))))...)).....----------. ( -27.40) >DroPse_CAF1 212783 102 - 1 G--------CUGUUUCUUGCCCCUGUCGCCCCAUGAGUGUAUAAUUAAAAUAAUAGCAGCAAAAGCCUAGUUUUAUUAUUAAUUAUGCAAGAACCCACACACAAAUACAA .--------....(((((((......(((.......))).(((((((((((((.(((.((....))...)))))))).)))))))))))))))................. ( -13.90) >DroEre_CAF1 206156 88 - 1 G--------CUGCUUC-UGCCAC--UCACCUCACGCGUGUAUAAUUAAAAUAAUAGCAGCGA-AGCCUAGUUCUAUUAUUAAUUAUGCAAGAACACACA----------A .--------.((.(((-(((...--.........)).((((((((((..(((((((.(((..-......))))))))))))))))))))))))))....----------. ( -16.20) >DroYak_CAF1 207429 89 - 1 G--------CUUCUAC-CGCCAC--UCACCUCACACGUGUAUAAUUAAAAUAAUAGCAGCAAAAGCCUAGUUUUAUUAUUAAUUAUGCAAGAACACACA----------A .--------.......-......--............((((((((((((((((.(((.((....))...)))))))).)))))))))))..........----------. ( -11.70) >DroAna_CAF1 208834 88 - 1 G--------CCACUCC-UGCCAC--UUACCUCAUGUGUGUAUAAUUAAAAUAAUAGCAGCAA-AGCCUAGUUUUAUUAUUAAUUAUGCAGGAACACACA----------A .--------....(((-((((((--.........)))...(((((((..(((((((.(((..-......))))))))))))))))))))))).......----------. ( -16.70) >DroPer_CAF1 214649 102 - 1 G--------CUGUUUCUUGCCGCUGUCGCCUCAUGAGUAUAUAAUUAAAAUAAUAGCAGCAAAAGCCUAGUUUUAUUAUUAAUUAUGCAAGAACCCACACACACAUACAA .--------....(((((((.((....))...........(((((((((((((.(((.((....))...)))))))).)))))))))))))))................. ( -14.50) >consensus G________CUGCUUC_UGCCAC__UCACCUCACGAGUGUAUAAUUAAAAUAAUAGCAGCAA_AGCCUAGUUUUAUUAUUAAUUAUGCAAGAACACACA__________A .....................................((((((((((..(((((((.(((.........))))))))))))))))))))..................... (-10.65 = -10.68 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:21 2006