Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,025,672 – 3,025,776 |
Length | 104 |
Max. P | 0.979747 |
Location | 3,025,672 – 3,025,776 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 93.65 |
Mean single sequence MFE | -18.23 |
Consensus MFE | -17.15 |
Energy contribution | -16.71 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.15 |
Mean z-score | -1.54 |
Structure conservation index | 0.94 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979747 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3025672 104 + 27905053 AAUUCUUCAAGAUUAUAUAGCAGUAGCUAUAAGCAACACUGUCAGCUUUUCGCUGAUACCCUUCAAAAUUAAUCACAUAAGCAGAAAAGUACGCUAUAUUUUUG .......(((((..(((((((.((.((.....)).))..(((((((.....)))))))..................................)))))))))))) ( -19.70) >DroSec_CAF1 12369 104 + 1 AAUUCUUCAAGAUUAUAUAGCAGUAGCUAUAAGCAACACCGUCAGCUUUUCGCUGAUACCCUUCAAAAUUAAUCACAUAAGCAGAAAAGUACGCUAUAUUUUUG .......(((((..(((((((.((.((.....)).)).......((((((((((.........................))).)))))))..)))))))))))) ( -19.61) >DroSim_CAF1 12523 104 + 1 AAUUCUUCAAGAUUAUAUAGCAGUAGCUAUAAGCAACACCGUCAGCUUUUCGCUGAUACCCUUCAAAAUUAAUCACAUAAGCAGAAAAGUACGCUAUAUUUUUG .......(((((..(((((((.((.((.....)).)).......((((((((((.........................))).)))))))..)))))))))))) ( -19.61) >DroEre_CAF1 12606 104 + 1 AAUUCUUCAAGAUUAUAUAGCAGUAGCUAUAAGCAAUACCGUCAGCUUUUCGCUGUUACCCUUCAAAAUUAAUCACAUAAGCAGAAAAGUACGCUAUAUUUUUG .......(((((..(((((((....((.....))..........((((((((((.........................))).)))))))..)))))))))))) ( -18.51) >DroYak_CAF1 14126 104 + 1 AAUUCUUCAAAAUUAUAUACCAGUUGCUAUCGGUAACACCGUCAGUUUUUCGCUGUUAUCAUUUUAAAAUAAUCACAUAAGCAGAAAAGUACGUUAUAUUUUUG .......(((((.((((.....(((((.....)))))..(((.(.((((..(((.........................)))..)))).)))).)))).))))) ( -13.71) >consensus AAUUCUUCAAGAUUAUAUAGCAGUAGCUAUAAGCAACACCGUCAGCUUUUCGCUGAUACCCUUCAAAAUUAAUCACAUAAGCAGAAAAGUACGCUAUAUUUUUG .......(((((..(((((((.((.((.....)).)).......((((((((((.........................))).)))))))..)))))))))))) (-17.15 = -16.71 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:52 2006