| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,995,353 – 23,995,484 |
| Length | 131 |
| Max. P | 0.904235 |
| Location | 23,995,353 – 23,995,448 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 85.05 |
| Mean single sequence MFE | -29.18 |
| Consensus MFE | -21.33 |
| Energy contribution | -21.89 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.904235 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23995353 95 + 27905053 UGACGCAGUUUUAUUGCGCUACGGCCGAUGGAGCCGGA-CCCGAACC------------C-------GGACCGGGAUUUCUUUCCAUCU----UUCCAUUCCAAUGCCGUCCAAUUCAU .(((((((((((((((.((....))))))))))).(((-.(((....------------)-------))...((((.....))))....----.))).......)).))))........ ( -27.70) >DroSec_CAF1 196904 95 + 1 UGACGCAGUUUUAUUGCGCUACGGCCGAUGGAGGUGGA-CCCGAACC------------C-------GGACCGGGAUUUCUUUCCAUCU----UUCCAUCCCAAUGUCGUCCAAUUCAU .((((((((...)))))((....)).((((((((((((-...(((((------------(-------(...)))).)))...)))))).----.)))))).....)))........... ( -29.80) >DroSim_CAF1 193459 95 + 1 UGACGCAGUUUUAUUGCGCUACGGCCGAUGGAGCCGGA-CCCGAACC------------C-------GGACCGGGAUUUCUUUCCAUCU----UUCCAUCCCAAUGCCGUCCAAUUCAU (((((((((...))))))..(((((.(((((((((((.-.......)------------)-------))...((((.....))))....----))))))).....))))).....))). ( -29.20) >DroYak_CAF1 206719 119 + 1 UGACGCAGUUUUAUUGCGCUACGGCCGAUGGACCCGGAACUCAAACCCAAACCCAAACCCAAACCCGGGACCCGGAUUUCUUUCCAUCUUUCUUUCCAUCCCAAUGCCGUCCAAUUCAU (((((((((...))))))..(((((.(((((((((((...........................)))))....(((......))).........)))))).....))))).....))). ( -30.03) >consensus UGACGCAGUUUUAUUGCGCUACGGCCGAUGGAGCCGGA_CCCGAACC____________C_______GGACCGGGAUUUCUUUCCAUCU____UUCCAUCCCAAUGCCGUCCAAUUCAU (((((((((...))))))..(((((.(((((((..(((.((((..(((..................)))..)))).)))..))))))).........((....))))))).....))). (-21.33 = -21.89 + 0.56)
| Location | 23,995,392 – 23,995,484 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 97.10 |
| Mean single sequence MFE | -15.57 |
| Consensus MFE | -15.65 |
| Energy contribution | -15.43 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.68 |
| Structure conservation index | 1.01 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.809266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23995392 92 + 27905053 CCGAACCCGGACCGGGAUUUCUUUCCAUCUUUCCAUUCCAAUGCCGUCCAAUUCAUUGCCGCUUUUCUUUCGCCCCACCCAUCUGGCUUCGC .((((.(((((..(((......................(((((..........)))))..((.........))....))).))))).)))). ( -16.00) >DroSec_CAF1 196943 92 + 1 CCGAACCCGGACCGGGAUUUCUUUCCAUCUUUCCAUCCCAAUGUCGUCCAAUUCAUUGCCGCUUUUCUUUCGCCCCACCCAUCUGGUUUCGC .((((.(((((..(((......................(((((..........)))))..((.........))....))).))))).)))). ( -17.00) >DroSim_CAF1 193498 92 + 1 CCGAACCCGGACCGGGAUUUCUUUCCAUCUUUCCAUCCCAAUGCCGUCCAAUUCAUUGCCGCUUUUCUUUCGCCCCACCCAUUUGGUUUCGC .((((.((((((.((((.....)))).......(((....)))..))))...........((.........))...........)).)))). ( -13.70) >consensus CCGAACCCGGACCGGGAUUUCUUUCCAUCUUUCCAUCCCAAUGCCGUCCAAUUCAUUGCCGCUUUUCUUUCGCCCCACCCAUCUGGUUUCGC .((((.(((((..(((......................(((((..........)))))..((.........))....))).))))).)))). (-15.65 = -15.43 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:20 2006