Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,989,565 – 23,989,656 |
Length | 91 |
Max. P | 0.874022 |
Location | 23,989,565 – 23,989,656 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 78.79 |
Mean single sequence MFE | -24.22 |
Consensus MFE | -16.67 |
Energy contribution | -18.75 |
Covariance contribution | 2.08 |
Combinations/Pair | 1.13 |
Mean z-score | -1.73 |
Structure conservation index | 0.69 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.874022 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23989565 91 + 27905053 GCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUGUGUUGUGUUCAGCUC---CCUGUUCA----- (((((((....)))).................(((((..((((((.((....))..))))))...))))).)))(..(((...---.)))..).----- ( -26.00) >DroVir_CAF1 211541 87 + 1 GCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAGCGGCUGCGGAAACGGAAGCCGUGUGUUGCGCUCUGUUUUUUUGUGUU------------ ...((((....)))).................(((((((((((((.((....))..))))))(((...))).......)))))))..------------ ( -25.00) >DroGri_CAF1 166276 92 + 1 GCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUGGGCUCCGUGUUUUUUUUUU-------ACUGC (((((((....))))((((((........(((.(((...((((((.((....))..)))))).))).)))......)))))).....-------..))) ( -28.44) >DroWil_CAF1 236513 79 + 1 ACAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCUUGUGUUGUACU---------------CUGUUCA----- (((((((....)))).................(((((....((((.((....))..))))))))).)))...---------------.......----- ( -18.80) >DroAna_CAF1 199552 86 + 1 GCCAUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUG-----UGUUCAGCUC---UCUGUUCA----- ...........((((.................(((((..((((((.((....))..))))))...)))-----))....))))---........----- ( -20.80) >DroPer_CAF1 207301 82 + 1 GCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUGUGUUCUG------------CUGUUCA----- (((((((....)))).................(((((..((((((.((....))..))))))...)))))...))------------)......----- ( -26.30) >consensus GCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUGUGCUCUGUU____U____UCUGUUCA_____ ...((((....))))...................(((..((((((.((....))..))))))...)))............................... (-16.67 = -18.75 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:16 2006