Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,989,315 – 23,989,419 |
Length | 104 |
Max. P | 0.955007 |
Location | 23,989,315 – 23,989,419 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 79.73 |
Mean single sequence MFE | -30.70 |
Consensus MFE | -22.08 |
Energy contribution | -22.88 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.17 |
Mean z-score | -2.16 |
Structure conservation index | 0.72 |
SVM decision value | 1.45 |
SVM RNA-class probability | 0.955007 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23989315 104 - 27905053 GUUCUAAAAGUAAGUGAGCUUCGAAUACUUUUACUUAGGUUUUUCUCUGCCUGUAGCAAUAGG-GAAAAGGAGCUCGAGCAGCUAGAAAGCUCUAGCUGGAGAAG .((((.........(((((((((((.((((......))))..)))....(((((....)))))-.....))))))))..((((((((....)))))))).)))). ( -32.40) >DroSec_CAF1 190846 103 - 1 GUUCUAAAAGUGAGUGAGCUUCGAAUACUUUUACUCGGGUUUUUCUCUGCCUGUAGCAAUGG--GAAAAGGAGCUCGAGCAGCUAGAAAGCUCUAGCUGGAGAAG .(((((((((((..((.....))..))))))).(((((((((((((((((.....)))..))--)))...)))))))))((((((((....)))))))).)))). ( -34.30) >DroSim_CAF1 187035 104 - 1 GUUCUAAAAGUGAGUGAGCUUCGGAUACUUUUACUUGGGUUUUUCUCUGCCUGUAGCACUGGG-GAAAAGGAGCUCGAGCAGCUAGAAAGCUCUAGCUGGAGAAG .((((.........((((((((....((((......))))((((((((((.....))...)))-)))))))))))))..((((((((....)))))))).)))). ( -32.20) >DroEre_CAF1 199357 87 - 1 GU------------------UUGAGUACUUCUACUUGGUUUUUUCUCUACCUGUACCAUUGGGGGCAGAGGAGCUCGAGCAGCUAGAAAGCUCUGGCUGAAGAAG ((------------------((((((.(((((....(((.........))).(..((....))..)))))).))))))))(((((((....)))))))....... ( -28.80) >DroYak_CAF1 200571 86 - 1 GU------------------UUGCGUACUUAAACUUGGUUUUUUCUCUCUCUGUACCAAUAGG-GAAAAGGAGCUCGAGCAGCUAGAAAGCUCUAGCUGGAGAAG ..------------------.......(((...(((((((((((...(((((((....)))))-)).))))))).))))((((((((....)))))))))))... ( -25.80) >consensus GUUCUAAAAGU_AGUGAGCUUCGAAUACUUUUACUUGGGUUUUUCUCUGCCUGUAGCAAUGGG_GAAAAGGAGCUCGAGCAGCUAGAAAGCUCUAGCUGGAGAAG ...........................(((((.(((((((((((.....(((((....))))).....)))))))))))((((((((....)))))))).))))) (-22.08 = -22.88 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:15 2006