| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,987,356 – 23,987,449 |
| Length | 93 |
| Max. P | 0.989075 |
| Location | 23,987,356 – 23,987,449 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 75.14 |
| Mean single sequence MFE | -24.27 |
| Consensus MFE | -12.98 |
| Energy contribution | -12.78 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.53 |
| SVM decision value | 2.15 |
| SVM RNA-class probability | 0.989075 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23987356 93 - 27905053 GC-----A--------ACGAGUAACAAUCGAUGC-GAA--AU--ACUUGGAUAAUUGGCGCUUAUUGAUACUUGAGCGCCACAUAAUCGUCUUAAUUACUUUGCAAACUAA ((-----(--------(((((((....(((...)-)).--.)--)))))(((.(((((((((((........))))))))).)).)))............))))....... ( -24.70) >DroVir_CAF1 209863 93 - 1 GC-----U--------A----AGACAAUCGAUGC-UCGCAUCGCAAUCGUUUAAGUGCCGUUUAUUGAUACUUGAACGCCACAUAAUCGUCCUAAUUACUUUGCAAACUCA ((-----.--------(----((.....(((((.-...)))))....((.(((.(((.((((((........)))))).))).))).)).........))).))....... ( -19.70) >DroPse_CAF1 203476 102 - 1 GC-----ACAGAAAAAGUGGGCAACAAUCGAUGCAGAA--AU--GCUUGGAUAAUUGGCGCUUAUUGAUACUUGAGCGCCACAUAAUCGUCUUAAUUACUUUGCAAACUAA ((-----(.((.......((((......(((.(((...--.)--)))))(((.(((((((((((........))))))))).)).)))))))......)).)))....... ( -29.42) >DroGri_CAF1 164614 89 - 1 GC-----U--------A----AAACAAUCGAUUC-GAGCAGUGU----UUUUAAUUGGCGUUUAUUGAUACUUGAGCGCCACAUAAUCGUCCUAAUUACUUUACAAACUAA ..-----.--------(----(((((.(((...)-))....)))----)))....(((((((((........))))))))).............................. ( -15.70) >DroWil_CAF1 234770 106 - 1 AAAAAAAAAAGAGAAAAGGGAAAACAAUCGAUGC-AAG--GU--ACUUGGAUAAUUGGCGCUUAUUGAUACUUGAGCGCCACAUAAUCGCCUUAAUUACUUUGCAAACUAA ...............................(((-(((--((--(...((.....(((((((((........)))))))))........)).....)))))))))...... ( -25.92) >DroPer_CAF1 205354 102 - 1 GC-----ACAGAAAAAGUGGGCAACAAUCGAUGCAGAA--AU--GCUUGGAUAUUUGGCGCUUAUUGAUACUUGAGCGCCACAUUAUCGUUUUAAUUACUUUGCAAACUAA ..-----........(((..((((....(((.(((...--.)--)))))((((..(((((((((........)))))))))...))))............))))..))).. ( -30.20) >consensus GC_____A________A_GGGAAACAAUCGAUGC_GAA__AU__ACUUGGAUAAUUGGCGCUUAUUGAUACUUGAGCGCCACAUAAUCGUCUUAAUUACUUUGCAAACUAA .......................................................(((((((((........))))))))).............................. (-12.98 = -12.78 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:14 2006