Locus 8943

Sequence ID 3R_DroMel_CAF1
Location 23,985,764 – 23,985,855
Length 91
Max. P 0.703265
window14336

overview

Window 6

Location 23,985,764 – 23,985,855
Length 91
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 83.50
Mean single sequence MFE -25.20
Consensus MFE -20.42
Energy contribution -20.35
Covariance contribution -0.07
Combinations/Pair 1.12
Mean z-score -1.75
Structure conservation index 0.81
SVM decision value 0.36
SVM RNA-class probability 0.703265
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23985764 91 - 27905053
-GCGGGGGCGGACAUUUUUU---AGCAGCGGCAUUUCAAAGAAAUUGUCAUGACAAAUUGAUACAAUUUCUUUGGCUUUUGUGGCUUGCCA-ACAU
-..(..((((..........---...(((.(((..(((((((((((((((........)))..))))))))))))....))).))))))).-.).. ( -25.41)
>DroPse_CAF1 201686 92 - 1
-ACAGGGGCGGGCAUUCCUC---AGCGGCGGCAUUUCAAAGAAAUUGUCAUGACAAAUUGAAACAAUUUCUUUGGCUUUUGUGGCUUUCGAGGCAU
-((((((((..((...((..---...))..))....((((((((((((((........)))..))))))))))))))))))).(((.....))).. ( -26.30)
>DroGri_CAF1 162989 74 - 1
-ACGA-GGCGCA-------------------CAUUUCAAAGAAAUUGUCAUGACAAAUUGAAACAAUUUCUUUGGCUUUUGUGGCUUGCCA-GCGU
-.(((-(.((((-------------------.(..(((((((((((((((........)))..))))))))))))..).)))).))))...-.... ( -23.20)
>DroYak_CAF1 196864 94 - 1
-GCGGGGGCGGACAUUUUUUUUAGGCAGCGGCAUUUCAAAGAAAUUGUCAUGACAAAUUGAAACAAUUUCUUUGGCUUUUGUGGCUUGCCA-ACAU
-((....))..............((((((.(((..(((((((((((((((........)))..))))))))))))....))).)).)))).-.... ( -27.90)
>DroAna_CAF1 196113 92 - 1
AACAGGGGCGGACAUUUUUU---AGCUGUGGCAUUUCAAAGAAAUUGUCAUGACAAAUUGAAAGAAUUUCUUUGGCUUUUGUGGCUUGCCG-GCAU
.((((((((...........---.((....))....((((((((((.(((........)))...))))))))))))))))))((....)).-.... ( -22.90)
>DroPer_CAF1 203478 92 - 1
-ACAGGGGCGGGCAUUCCUC---AGCAGCGGCAUCUCAAAGAAAUUGUCAUGACAAAUUGAAACAAUUUCUUUGGCUUUUGUGGCUUUCGAGGCAU
-...............((((---...(((.(((..(((((((((((((((........)))..))))))))))))....))).)))...))))... ( -25.50)
>consensus
_ACAGGGGCGGACAUUUUUU___AGCAGCGGCAUUUCAAAGAAAUUGUCAUGACAAAUUGAAACAAUUUCUUUGGCUUUUGUGGCUUGCCA_GCAU
.((((((((...............((....))....((((((((((((((........)))..))))))))))))))))))).............. (-20.42 = -20.35 +  -0.07)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:13 2006