| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,985,154 – 23,985,244 |
| Length | 90 |
| Max. P | 0.774029 |
| Location | 23,985,154 – 23,985,244 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 74.58 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -14.39 |
| Energy contribution | -14.00 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.774029 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23985154 90 - 27905053 ---AAGGCAAAA------CGAGCAAUGGUCACACGGC-ACAGGACAUUUAAUGUAAACGUUUUGUCGACAAAUGUCAAAUGGCCACUC-UCCAGGACAAC----U--------- ---..(((((((------((.((..((....))..))-.....((((...))))...)))))))))......((((...(((......-.))).))))..----.--------- ( -21.60) >DroPse_CAF1 200939 106 - 1 ---CAGGCAAACCGAAAACCGGCAAUGGUCAU--G---GCAAAACAUUUAAUGUAAACGUUUUGUCGACAAAUGUCAAAUGGCCACUCCUCAAGGACAGUCGUCUGGGGCGGAG ---........(((.....)))...(((((((--(---(((((((.((((...)))).))))))))(((....)))..)))))))((((((..((((....))))..)).)))) ( -33.30) >DroEre_CAF1 195245 90 - 1 ---AAGGCAAAA------GGAGCAAUGGUCACACGGC-GCAGGACAUUUAAUGUAAACGUUUUGUCGACAAAUGUCAAAUGGCCACUC-UCCCGGACAAC----U--------- ---.........------((((...((((((......-....((((...((((....)))).))))(((....)))...))))))..)-)))........----.--------- ( -21.50) >DroWil_CAF1 232540 91 - 1 --UAAGCCAAAA---CAGGCGGCAAUGGACAU--G---GCAAAACAUUUAAUGUAAACGUUUUGUCGACAAAUGUCAAAUGACCACUUCUCAAGGACAAG----C--------- --...(((....---..)))((((...(((((--(---(((((((.((((...)))).)))))))).....)))))...)).))................----.--------- ( -20.20) >DroAna_CAF1 195482 94 - 1 GUGAAGAAGAAA------CGGGCAAUGGUCACACGAAAGCAAAGCAUUUAAUGUAAACGUUUUGUCGACAAAUGUCAAACGGCCACUC-GGCAGGACAAC----U--------- .((..((.((((------(((((....)))(((..(((((...)).)))..)))...)))))).))..))..((((.....(((....-)))..))))..----.--------- ( -19.40) >DroPer_CAF1 202732 106 - 1 ---CAGGCAAACCGAAAGCCGGCAAUGGUCAU--G---GCAAAACAUUUAAUGUAAACGUUUUGUCGACAAAUGUCAAAUGGCCACUCCUCAAGGACAGUCGUCUGGGGCGGAG ---..(((.........))).....(((((((--(---(((((((.((((...)))).))))))))(((....)))..)))))))((((((..((((....))))..)).)))) ( -34.50) >consensus ___AAGGCAAAA______CCGGCAAUGGUCAC__G___GCAAAACAUUUAAUGUAAACGUUUUGUCGACAAAUGUCAAAUGGCCACUC_UCAAGGACAAC____U_________ .........................((((((.......(((((((.((((...)))).))))))).(((....)))...))))))............................. (-14.39 = -14.00 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:12 2006