Locus 8941

Sequence ID 3R_DroMel_CAF1
Location 23,983,783 – 23,983,874
Length 91
Max. P 0.724250
window14334

overview

Window 4

Location 23,983,783 – 23,983,874
Length 91
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 70.52
Mean single sequence MFE -15.27
Consensus MFE -8.61
Energy contribution -8.30
Covariance contribution -0.31
Combinations/Pair 1.43
Mean z-score -1.62
Structure conservation index 0.56
SVM decision value 0.41
SVM RNA-class probability 0.724250
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23983783 91 + 27905053
GCCAAAAACUAUAGUCAAGAAAACUAAACUUCUGAAAUUAA----------CUAAAAUUCGUUAACUUCUCUUUGGCCGGCAGAUAACUGUAAUUCUAAAA
((((((...........((((........))))(((.((((----------(........))))).)))..))))))..((((....)))).......... ( -14.70)
>DroSec_CAF1 185327 101 + 1
GCCAAAAACUAUAGUCAAGAAAACCAAACUUCUGAAAUUAGCUCAAUCAAGCUAGAAUUCGUUAAUUUUUAUUUGGCAGGCAGGUAACUGUAAAUCUAAUA
((((((........(((.(((........))))))..((((((......))))))................))))))..((((....)))).......... ( -18.80)
>DroSim_CAF1 181312 92 + 1
GCCAAAAACUAUAGUCAAGAAAACGAAACUUCUGAAACUAGCUUAGUCAAGCUAGAAUUCGUUAAUUUUUCUUUGGCAGGCAAAUA----CAAAUU-----
((((((..((.......))..((((((.(....)...(((((((....)))))))..))))))........)))))).........----......----- ( -17.90)
>DroYak_CAF1 194795 86 + 1
GUUAAAAACUACAAUCAAGUAAUCCAAACUUCAUAAACUAGCUAAAUCAAGCUACACUUUUUUAGUAUUUCUUUUGAAGGCAGAUA---------------
.....................(((....(((((.....(((((......))))).(((.....)))........)))))...))).--------------- (  -9.70)
>consensus
GCCAAAAACUAUAGUCAAGAAAACCAAACUUCUGAAACUAGCU_AAUCAAGCUAGAAUUCGUUAAUUUUUCUUUGGCAGGCAGAUA____UAAAUC_____
(((..................................((((((......)))))).....(((((.......))))).))).................... ( -8.61 =  -8.30 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:11 2006