| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,983,414 – 23,983,506 |
| Length | 92 |
| Max. P | 0.904979 |
| Location | 23,983,414 – 23,983,506 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 93.30 |
| Mean single sequence MFE | -22.10 |
| Consensus MFE | -19.01 |
| Energy contribution | -19.82 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.904979 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23983414 92 + 27905053 GUAGAAAUGGCAACAACAAUGCCAUAUAGCCAGGCUAUAAGGAUGAAGACAUUAAGGCCCAGCAUGCGUUACCAACGCACCCAUACACAGAC (((...((((((.......))))))...((..((((.....((((....))))..))))..)).(((((.....)))))....)))...... ( -21.80) >DroSec_CAF1 184958 92 + 1 GCUGAAAUGGCAACAACAAUGCCAUAUAGCCAGGCUAUAAGGAUGAAGACAUUAAGGCCCAGCAUGCGUUACCAACGCACCCAUACACACAC ((((..((((((.......)))))).......((((.....((((....))))..)))))))).(((((.....)))))............. ( -23.90) >DroSim_CAF1 180972 92 + 1 GCUGAAAUGGCAACAACAAUGCCAUAUAGCCAGGCUAUAAGGAUGAAGACAUUAGGGCCCAGCAUGCGUUACCAACGCACCCAUACACAGAC ((((..((((((.......)))))).......((((.....((((....))))..)))))))).(((((.....)))))............. ( -25.00) >DroYak_CAF1 194431 92 + 1 GCAGAAAUGGCAACAACAAUGCCACACAGCCUGGCUAUAAGGAUGAAGACAUUAAGGCCCAGCAUGCGUUACUAACACACACACACAGAGAC (((....(((((.......)))))....((..((((.....((((....))))..))))..)).)))......................... ( -17.70) >consensus GCAGAAAUGGCAACAACAAUGCCAUAUAGCCAGGCUAUAAGGAUGAAGACAUUAAGGCCCAGCAUGCGUUACCAACGCACCCAUACACAGAC ((((..((((((.......)))))).......((((.....((((....))))..)))))))).(((((.....)))))............. (-19.01 = -19.82 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:10 2006