Locus 8937

Sequence ID 3R_DroMel_CAF1
Location 23,978,216 – 23,978,336
Length 120
Max. P 0.614003
window14327

overview

Window 7

Location 23,978,216 – 23,978,336
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 95.99
Mean single sequence MFE -24.40
Consensus MFE -20.98
Energy contribution -20.90
Covariance contribution -0.08
Combinations/Pair 1.03
Mean z-score -1.51
Structure conservation index 0.86
SVM decision value 0.16
SVM RNA-class probability 0.614003
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23978216 120 + 27905053
GAAGGAAAUUAAGCAAAAAGCGCAAAGAUUUAUUUCGCUUUGAUCAAAAUUAAAUGAAUUGAUUUUAAUACGCCCCGUGGGCAAGAUAUUUCCUACGCUUUCGCAAAUGAAAACGCAUAA
..(((((((.......((((((.(((......))))))))).(((((((((((.....)))))))).....((((...))))..)))))))))).((.(((((....))))).))..... ( -24.90)
>DroVir_CAF1 199765 119 + 1
GAAGGAAAUUAAGCAAAAAGCGCAAAGAUUUAUUUCGCUUUGAUCAAAAUUAAAUGAAUUGAUUUUAAUACGCCCCGUGGGCAAGAUAUUUCCUACGUUGG-CCAAAUGAAAACGCGUAA
..(((((((.......((((((.(((......))))))))).(((((((((((.....)))))))).....((((...))))..)))))))))).((((..-(.....)..))))..... ( -24.50)
>DroGri_CAF1 155151 119 + 1
GAAGGAAAUUAAGCAAAAAGCGCAAAGAUUUAUUUCGCUUUGAUCAAAAUUAAAUGAAUUGAUUUUAAUACGCCCCGUGGGCAAGAUAUUUUCUACGUUGG-CCAAAUGAAAACGCAUAA
..(((((((.......((((((.(((......))))))))).(((((((((((.....)))))))).....((((...))))..)))))))))).((((..-(.....)..))))..... ( -21.60)
>DroWil_CAF1 224986 119 + 1
GAAGGAAAUUAAGCAAAAAGCGCAAAGAUUUAUUUCGCUUUGAUCAAAAUUAAAUGAAUUGAUUUUAAUACGCCCCGUGGGCAAGAUAUUUUCAACGUUUUC-CAAAUGAAAACGCAUAA
...((((((.......((((((.(((......))))))))).(((((((((((.....)))))))).....((((...))))..)))))))))..(((((((-.....)))))))..... ( -24.80)
>DroMoj_CAF1 203840 119 + 1
GAAGGAAAUUAAGCAAAAAGCGCAAAGAUUUAUUUCGCUUUGAUCAAAAUUAAAUGAAUUGAUUUUAAUACGCCCCGUGGGCAAGAUAUUUUCUACGUUGG-CCAAAUGAAAACGCAUAA
..(((((((.......((((((.(((......))))))))).(((((((((((.....)))))))).....((((...))))..)))))))))).((((..-(.....)..))))..... ( -21.60)
>DroAna_CAF1 188444 120 + 1
GAAGGAAAUUAAGCAAAAAGCGCAAAGAUUUAUUUCGCUUUGAUCAAAAUUAAAUGAAUUGAUUUUAAUACGCCCCGUGGGCAAGAUAUUUCCUUCGCUUUUGCAAAUGAAAACGCAUAA
(((((((((.......((((((.(((......))))))))).(((((((((((.....)))))))).....((((...))))..))))))))))))((.(((........))).)).... ( -29.00)
>consensus
GAAGGAAAUUAAGCAAAAAGCGCAAAGAUUUAUUUCGCUUUGAUCAAAAUUAAAUGAAUUGAUUUUAAUACGCCCCGUGGGCAAGAUAUUUCCUACGUUGG_CCAAAUGAAAACGCAUAA
(.(((((((.......((((((.(((......))))))))).(((((((((((.....)))))))).....((((...))))..)))))))))).)........................ (-20.98 = -20.90 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:04 2006