Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,954,684 – 23,954,776 |
Length | 92 |
Max. P | 0.973531 |
Location | 23,954,684 – 23,954,776 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 77.58 |
Mean single sequence MFE | -31.93 |
Consensus MFE | -17.00 |
Energy contribution | -17.83 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.00 |
Mean z-score | -2.64 |
Structure conservation index | 0.53 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973531 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23954684 92 + 27905053 AG-UGC-CGGCGUAUACAUCCAGCG---GCUCCUCAGUGUGGCGUGAAUCGUAAAUCAACGAUUUAGGCGCACAUGCAGCGACUGAGGGAAAUUUUU ..-.((-((.(...........)))---))((((((((((.((.((((((((......)))))))).))((....)).)).))))))))........ ( -32.40) >DroGri_CAF1 128707 91 + 1 UGUUGCGUGGCAUACGAAUUCGGUG---GCUCCUCAGUGUGGCGUGAAUCGUAAAUCAACGAUUUAGGCGC--AUGCAGCGCAUCGGCCGCUU-UUU ......(((((.........(((((---(((.....(((((((.((((((((......)))))))).)).)--))))))).))))))))))..-... ( -31.20) >DroEre_CAF1 164565 79 + 1 ---------------CCAUCCAGCG---GCUCCUCAGUGUGGCGUGAAUCGUAAAUCAACGAUUUAGGCGCACAUGCAGCGACUGAGGGAAAUUUUU ---------------...(((..((---(.((((..(((((((.((((((((......)))))))).)).)))))..)).)))))..)))....... ( -28.30) >DroWil_CAF1 198623 87 + 1 UGUUGC-UGGUAUACUGAUUCGGCGGUGGCUCCUCAGUGUGGCGUGAAUCGUAAAUCAACGAUUUAGG--CACAUGCA-------AGGCAACUUUUU .(((((-(((..(((((......)))))...))...(((((((.((((((((......)))))))).)--).))))).-------.))))))..... ( -31.60) >DroAna_CAF1 165149 92 + 1 UGUUGC-CGCUGUACUGAUUCAACG---GCUCCUCAGUGUGGCGUGAAUCGUAAAUCAACGAUUUAGGCGCACAUGCAGCGAGUCAGGCAAAUU-UU ..((((-((.((........)).)(---((((((..(((((((.((((((((......)))))))).)).)))))..)).))))).)))))...-.. ( -33.90) >DroPer_CAF1 168300 91 + 1 UGUUGC-CACUGUACUGAUUCAGCA---GCUCCUCAGUGUGGCGUGAAUCGUAAAUCAACGAUUUAGGCGCACAUGCAGCGAGCAAGGC--AUUUUU ...(((-(.(((........)))..---((((((..(((((((.((((((((......)))))))).)).)))))..)).))))..)))--)..... ( -34.20) >consensus UGUUGC_CGGUGUACUGAUUCAGCG___GCUCCUCAGUGUGGCGUGAAUCGUAAAUCAACGAUUUAGGCGCACAUGCAGCGACUCAGGCAAAUUUUU ............................(((.....(((((((.((((((((......)))))))).)).)))))..)))................. (-17.00 = -17.83 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:00 2006