Locus 8931

Sequence ID 3R_DroMel_CAF1
Location 23,950,247 – 23,950,340
Length 93
Max. P 0.938034
window14319

overview

Window 9

Location 23,950,247 – 23,950,340
Length 93
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 82.57
Mean single sequence MFE -17.70
Consensus MFE -12.72
Energy contribution -13.80
Covariance contribution 1.08
Combinations/Pair 1.17
Mean z-score -2.28
Structure conservation index 0.72
SVM decision value 1.27
SVM RNA-class probability 0.938034
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23950247 93 + 27905053
ACAAAAAUAAUAAAAUAUCCUCUUAAAUAUGGGAAUUACCCAUAUGUUUUGAUGGCGAUUU--UCGCUUGCUAUCAAAUGUUUUCUUUAAAA-AUA
...((((((.................(((((((.....)))))))..(((((((((((...--....)))))))))))))))))........-... ( -20.50)
>DroSec_CAF1 151939 92 + 1
GCAAAAAUACUACAAUAACCUUUUU-AUAUGGGAAUUCCCCAUAUGUUUUGAUGGUGAUUU--UUGCUUGCCAUCAAAUGAUUUCUUUAAAA-AUA
........................(-(((((((.....)))))))).((((((((..(...--....)..))))))))..............-... ( -20.80)
>DroSim_CAF1 153494 92 + 1
GCAAAAAUACUAAAAUAUCCUUUUU-AUAUGGGAAUUACCCAUACGUUUUGAUGGCGAUUU--UUUCUUGCCAUCAAAUGAUUUCUUUAAAA-AUA
....................(((((-(((((((.....))))))(((((.((((((((...--....))))))))))))).......)))))-).. ( -21.60)
>DroEre_CAF1 159997 94 + 1
AAAAAAAAACUAAAAUAUGCUCUCAAAUAUGAGCAUUACCAAUAUGUUUUCAUGGCCAUUU--UCGUUUGCUGUCAAAUGCUUACUUUAAAAUAUA
......((((.(((((((((((........))))))......((((....))))...))))--).))))((........))............... ( -12.10)
>DroYak_CAF1 160214 95 + 1
AGAAAAAUACUUAAAUAUACUCUCAAAUAUGGGGAUUACCAAUAUGUUUUCAUGGCGAUUUCUCUGUUUGCUCUCAAAUGUUUUCUUUGAAA-AUA
.......................((((((.((..((..(((...((....)))))..))..)).))))))........(((((((...))))-))) ( -13.50)
>consensus
ACAAAAAUACUAAAAUAUCCUCUUAAAUAUGGGAAUUACCCAUAUGUUUUGAUGGCGAUUU__UUGCUUGCUAUCAAAUGAUUUCUUUAAAA_AUA
..........................(((((((.....)))))))..(((((((((((.........))))))))))).................. (-12.72 = -13.80 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:57 2006