Locus 8930

Sequence ID 3R_DroMel_CAF1
Location 23,949,836 – 23,949,927
Length 91
Max. P 0.930176
window14318

overview

Window 8

Location 23,949,836 – 23,949,927
Length 91
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 72.07
Mean single sequence MFE -20.58
Consensus MFE -3.20
Energy contribution -3.76
Covariance contribution 0.56
Combinations/Pair 1.38
Mean z-score -2.01
Structure conservation index 0.16
SVM decision value 1.20
SVM RNA-class probability 0.930176
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23949836 91 - 27905053
AAAAUUCCAGCGUU---GACAAUGCAGCAAC---AGAAACAACAAAUUGAAAGCGAACA--------------G-CGGAAAAUUUAUAGCGCCUGUUCAGGAAGA----GUGGA--AA
....((((((((((---(......))))...---.....(((....)))...))(((((--------------(-((............)).)))))).......----.))))--). ( -18.40)
>DroGri_CAF1 122713 114 - 1
AAAAAUUUCCCAACAGCUACCAAACAACUUC---AGGAGUAGCAAAUAGACGGCCAACAUUGUGGUGUGAGUUGAAGCAAAAUUUAUAGCACUCGCUGGAAAUGGAUA-GUGAAAUAA
....(((((......(((((((......(((---((((((.((.........((((......))))(((((((.......))))))).)))))).)))))..))).))-))))))).. ( -23.00)
>DroSim_CAF1 153068 91 - 1
AAAAUUCCAGCGUU---GACAAUGCAGCAAC---AGGAACAACAAAUUGAAAGCGAACA--------------G-CGGAAAAUUUAUAGCGCCUGUUGAGAAAGA----GUGGA--AA
....(((((((((.---....))))..((((---(((......(((((....((.....--------------)-)....)))))......))))))).......----.))))--). ( -22.70)
>DroEre_CAF1 159577 89 - 1
AAAAUUCCAGCGUU---GACAAUGCAACAGC---AGAAACAACAAAUUGAAGGCGAACA--------------G-CGGAAAAUUUAUAGCUCCUGUUGAGAGAG------UGAA--AA
....((((...(((---(....(((....))---)....)))).........((.....--------------)-)))))........((((((....)).)))------)...--.. ( -17.20)
>DroYak_CAF1 159770 97 - 1
AAAAUUCCAGCGUU---GACAAUGCAGCAGCAAUAGAAACAACAAAUUGAAAGCGAACA--------------G-CGGAAAAUUUAUAGCGCCUGUUGAGAAAGA-CAGUUGGA--AA
....((((((((((---(....(((....)))...........(((((....((.....--------------)-)....))))).))))))(((((......))-))).))))--). ( -21.60)
>consensus
AAAAUUCCAGCGUU___GACAAUGCAGCAAC___AGAAACAACAAAUUGAAAGCGAACA______________G_CGGAAAAUUUAUAGCGCCUGUUGAGAAAGA____GUGGA__AA
.....(((((((((......))))).........................................................(((.((((....)))).)))........)))).... ( -3.20 =  -3.76 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:56 2006