Locus 8929

Sequence ID 3R_DroMel_CAF1
Location 23,947,479 – 23,947,580
Length 101
Max. P 0.702600
window14317

overview

Window 7

Location 23,947,479 – 23,947,580
Length 101
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 68.94
Mean single sequence MFE -19.98
Consensus MFE -9.58
Energy contribution -12.02
Covariance contribution 2.44
Combinations/Pair 1.24
Mean z-score -1.83
Structure conservation index 0.48
SVM decision value 0.36
SVM RNA-class probability 0.702600
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23947479 101 - 27905053
AGGUGUAAAAAC--UAAUUUGAGCAUGUUAUAGGCAAAUACUGAUAUUAUAAUUUUUCG-----------------CUUUUUUUCGAAUAAAUAAUCAGUAUUUUCGCUAUAGCAAGCGA
.(((......))--).......((.(((((((((.((((((((((..(((.....((((-----------------........))))...))))))))))))).).)))))))).)).. ( -23.70)
>DroSec_CAF1 149187 100 - 1
AAGUGUAAAAAAAUUCAUUUAAGCAAGUUAUGGGCAAAUACUGAUAUAAAAAUUUA--------------------AUUUUUGCCUAUAAAAUAAUCAGUAUUUUGGCUAUAGCUAGCGA
(((((..........)))))..((.((((((((.(((((((((((...........--------------------..................))))))).)))).)))))))).)).. ( -22.45)
>DroSim_CAF1 150596 98 - 1
AAGUGUAAAAAA--UAAUUUGAGCAAGUUAUAGGCAAAUACUGAUAUAAAAAUUUA--------------------AUUUUUGCCAAUAAAAUAAUCAGUAUUUUGGCCAUAGCAAGCGA
............--........((..(((((.(((.(((((((((...........--------------------..................)))))))))...))))))))..)).. ( -18.25)
>DroEre_CAF1 157348 116 - 1
AAGACUGCGACC--CAAUUUGAUCAAGUUACAGGUAAAUCCCGUCUUUAG--UUUUUCUUAUUGCCCAUAGUCCCUAUUUCCGUCAAUAAAAUAAUUAGUGUUUUAGCGAUAGAAACCGA
..(((((.(...--((((..((..((.(.((.((.....)).))....).--))..))..))))..).)))))....((((..((..(((((((.....)))))))..))..)))).... ( -15.50)
>consensus
AAGUGUAAAAAA__UAAUUUGAGCAAGUUAUAGGCAAAUACUGAUAUAAAAAUUUA____________________AUUUUUGCCAAUAAAAUAAUCAGUAUUUUGGCUAUAGCAAGCGA
......................((.((((((((.(((((((((((.................................................))))))).)))).)))))))).)).. ( -9.58 = -12.02 +   2.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:55 2006