| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,939,844 – 23,939,934 |
| Length | 90 |
| Max. P | 0.657157 |
| Location | 23,939,844 – 23,939,934 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 82.53 |
| Mean single sequence MFE | -20.42 |
| Consensus MFE | -13.72 |
| Energy contribution | -14.08 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23939844 90 - 27905053 CACGC--UG---CAAA-AAAAGGCAGGAAACGUAAAUGAAACUAGAAUCAAUUUGGUGGCUGAUGAUAGCCAUCACUUGGAUGGAGAUUAAGGAAA ....(--((---(...-.....))))...............((...(((....(((((((((....)))))))))....)))..)).......... ( -19.80) >DroVir_CAF1 158534 90 - 1 -AUGG--CG---AAAAUGAACAGCAGGAAACGUAGAUGAAACUAAAAUCAAUUUGGGGCCUGCUGAUAGCAAUCGUUGAGAUUGAGAUUAACGCGA -...(--((---........(((((((...(.(((((((........)).))))).).)))))))((..(((((.....)))))..))...))).. ( -25.60) >DroSim_CAF1 142792 89 - 1 CACGG--UG---CAAA--AAAGGCAGGAAACGUAAAUGAAACUAGAAUCAAUUUGGUGGCUGAUGAUAGCCAUCACUUGGAUGGAGAUUAAGAAAA .((..--((---(...--....)))(....)))........((...(((....(((((((((....)))))))))....)))..)).......... ( -18.20) >DroEre_CAF1 146913 87 - 1 CAUGG--CG---CAAA--AAAGGCAGGAAACGUAAAUGAAACUAGAAUCAAUUUGGUGGCUGAUGAUAGCCAUCACUUGGAUUGAGAUUAAGGC-- (((.(--((---(...--....)).(....)))..)))...((.((.(((((((((((((((....)))))))))....))))))..)).))..-- ( -18.90) >DroYak_CAF1 149468 94 - 1 CAGGAGUCGCAGGAAA--AACGGCAGGAAACGUAAAUGAAACUAGAAUCAAUUUGGUGGCUGAUGAUAGCCAUCACUUGGAUUGAGAUUAAGGCAA .....(((((.(....--..).)).(....)...........(((..(((((((((((((((....)))))))))....))))))..))).))).. ( -21.60) >DroAna_CAF1 149641 82 - 1 C------GG---C-----AAGAGCAGGAAACGUAAAUGAAACUAAAAUCAAUUUGGUGGCUGCUGAUAGCCAUCACUUGGAUUGAGAUUAAAGGAG .------.(---(-----....)).(....)...........(((..(((((((((((((((....)))))))))....))))))..)))...... ( -18.40) >consensus CACGG__CG___CAAA__AAAGGCAGGAAACGUAAAUGAAACUAGAAUCAAUUUGGUGGCUGAUGAUAGCCAUCACUUGGAUUGAGAUUAAGGCAA .........................(....)..........((...(((....(((((((((....)))))))))....)))..)).......... (-13.72 = -14.08 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:51 2006