Locus 8924

Sequence ID 3R_DroMel_CAF1
Location 23,936,832 – 23,936,925
Length 93
Max. P 0.999565
window14310

overview

Window 0

Location 23,936,832 – 23,936,925
Length 93
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 77.01
Mean single sequence MFE -28.10
Consensus MFE -18.56
Energy contribution -18.76
Covariance contribution 0.20
Combinations/Pair 1.13
Mean z-score -3.29
Structure conservation index 0.66
SVM decision value 3.73
SVM RNA-class probability 0.999565
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23936832 93 - 27905053
AU--CAAACCUCCAACAAUCCAUUCCUUUACAUUUAGCU-CUGAUAAGCAAGCUACCUCUUCUCGCAGUGUACCUGCACUGUGAGAGCGGGAACCU
..--..............................(((((-.((.....)))))))(((.((((((((((((....)))))))))))).)))..... ( -26.60)
>DroSec_CAF1 138337 91 - 1
UU--CAAACAUCGAACUAUCACCUCUUU--CACUUAGUU-CUGAUAAGCAAGCUACCUUUUCUUGCAGUGUACAUGCACUGUGAGAGCGGGGACCU
..--.....(((((((((..........--....)))))-).)))..........(((.((((..((((((....))))))..)))).)))..... ( -26.14)
>DroSim_CAF1 139697 91 - 1
UU--AAAACAUCGAACUAUCACCUCUUU--CACUUAGUU-CUGAUAAGCAAGCUACCUUUUCUUGCAGUGUACAUGCACUGUGAGAGCGGGGACCU
..--.....(((((((((..........--....)))))-).)))..........(((.((((..((((((....))))))..)))).)))..... ( -26.14)
>DroEre_CAF1 143888 93 - 1
UUUUACCAGGGCAAACA-AACCCUCCUU-UCAUUUAGUU-CGGUUAGGAAAGCCCCCUUUUCUUGCAGUGCACCUGCACUGUGAGAGCGGGAACCU
........((((...(.-((((...((.-......))..-.)))).)....))))(((.((((..((((((....))))))..)))).)))..... ( -31.90)
>DroYak_CAF1 146237 96 - 1
UUUUGCAAGGGCAAACCAUGCUCUCCUUAUCAUUUAGUUUUGGUAAAGACAGCUAACUUUUCUUGCAGUGCACCUGCACCGUGAGUGCGGGAACCU
..(((((((((....))..(((.((.((((((........)))))).)).)))........)))))))....((((((.(....)))))))..... ( -29.70)
>consensus
UU__AAAACAUCAAACAAUCCCCUCCUU__CAUUUAGUU_CUGAUAAGCAAGCUACCUUUUCUUGCAGUGUACCUGCACUGUGAGAGCGGGAACCU
.......................................................(((.((((((((((((....)))))))))))).)))..... (-18.56 = -18.76 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:49 2006