Locus 8923

Sequence ID 3R_DroMel_CAF1
Location 23,936,450 – 23,936,544
Length 94
Max. P 0.589858
window14309

overview

Window 9

Location 23,936,450 – 23,936,544
Length 94
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.45
Mean single sequence MFE -29.27
Consensus MFE -22.31
Energy contribution -22.42
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.45
Structure conservation index 0.76
SVM decision value 0.11
SVM RNA-class probability 0.589858
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23936450 94 - 27905053
C-AACCACAAC----------AGUUGUCGUUGUCUGCUAAAUUGGUUUUCUUUUUGUCAAUUGGGGAUUUCGAUUGUUGCAAGAGGCCAAAGCGACGACAUUGCC---------------
(-(((......----------.))))..((((((.(((...((((....(((((((((((((((.....)))))))..)))))))))))))))))))))......--------------- ( -24.50)
>DroVir_CAF1 154937 105 - 1
CUGGCCUUGGCGUGCCUUGACUACUGUCGUUGUCUGCUAAAUUGGUUUUCUUUUUGUCAAUUGGGGAUUUCGAUUGUUGCAAAAGGCCACAGCGACGACAUCGGC---------------
...((....))..(((..(((....)))((((((.(((....(((....(((((((((((((((.....)))))))..))))))))))).)))))))))...)))--------------- ( -30.80)
>DroPse_CAF1 149024 95 - 1
CUCGCCACAAC----------AGUUGUCGUUGUCUGCUAAAUUGGUUUUCUUUUUGUCAAUUGGGGAUUUCGAUUGUUGCAAAAGGCCAAAGCGACGACAUUGGC---------------
...((((....----------.(((((((((((((((..((((((..(((((..(....)..)))))..))))))...))...))))...)))))))))..))))--------------- ( -26.60)
>DroGri_CAF1 109390 99 - 1
CUAGCCACGACGCG---------UUGUCGUUGUCUACUAAAUUGGUUUUCUUUUUGUCAAUUGGGGAUUUCGAUUGUUGCAAGAGGCCACAGCGACGACAUCGACGUC------------
........((((((---------.(((((((((.........(((....(((((((((((((((.....)))))))..)))))))))))..))))))))).)).))))------------ ( -29.10)
>DroWil_CAF1 179213 109 - 1
G-UUCAACGAC----------UGUUGUCGUUGUCUGCUAAAUUGGUUUUCUUUUUGUCAAUUGGGGAUUUCGAUUGUUGCAAAAGGCCAAAGCGACGACAUUGGUGUCGUCCUGGCCCUC
.-..(((((((----------....)))))))..(((..((((((..(((((..(....)..)))))..))))))...)))...(((((..(.(((((((....)))))))))))))... ( -38.00)
>DroPer_CAF1 149482 95 - 1
CUCGCCACAAC----------AGUUGUCGUUGUCUGCUAAAUUGGUUUUCUUUUUGUCAAUUGGGGAUUUCGAUUGUUGCAAAAGGCCAAAGCGACGACAUUGGC---------------
...((((....----------.(((((((((((((((..((((((..(((((..(....)..)))))..))))))...))...))))...)))))))))..))))--------------- ( -26.60)
>consensus
CUAGCCACAAC__________AGUUGUCGUUGUCUGCUAAAUUGGUUUUCUUUUUGUCAAUUGGGGAUUUCGAUUGUUGCAAAAGGCCAAAGCGACGACAUUGGC_______________
........................((((((((.((......((((....(((((((((((((((.....)))))))..)))))))))))))))))))))).................... (-22.31 = -22.42 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:48 2006