| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,934,214 – 23,934,316 |
| Length | 102 |
| Max. P | 0.736122 |
| Location | 23,934,214 – 23,934,316 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.85 |
| Mean single sequence MFE | -32.13 |
| Consensus MFE | -20.06 |
| Energy contribution | -20.25 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.736122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23934214 102 + 27905053 --------GGGCUCCG---------AGGGG-GACAACCCGCGGCGCAAAUAAAAAGUCAGGUUUUUAACUAAAUGACUUUUUGUUGUUGUGCACACGCAUUGCUACACACAAACGCACUC --------..((.(((---------.(((.-.....))).))).)).((((((((((((..(........)..))))))))))))((.((((....)))).))................. ( -30.40) >DroVir_CAF1 152555 112 + 1 -------CAGGGUGCCAG-CUGAACUUUGGGGGCUGCCCGCUGCGCAAAUAAAAAGUCAGGUUUUUAACUAAAUGACUUUUUGUUGUUGUGCACACGCAUUGCUACACAUAAACGCACUC -------..(((((((..-(..(...)..).))).))))((((((((((((((((((((..(........)..)))))))))))..)))))))...))..(((...........)))... ( -32.30) >DroGri_CAF1 105905 117 + 1 --UUGAGCUGGGUGCGAUCCUGAACUUUGG-GGCUGCCCGCAGCGCAAAUAAAAAGUCAGGUUUUUAACUAAAUGACUUUUUGUUGUUGUGCACACGCAUUGCUACACAUAAACGCACUC --....((((((.(((..((..(...)..)-)..))))).))))((.((((((((((((..(........)..))))))))))))((.((((....)))).))...........)).... ( -36.70) >DroYak_CAF1 143511 110 + 1 UGGCGAG-GUGCUGCA--------AAGGGG-GACAACCCGCGGCGCAAAUAAAAAGUCAGGUUUUUAACUAAAUGACUUUUUGUUGUUGUGCACACGCAUUGCUACACACAAACGCACUC ..(((..-(((..(((--------(.(((.-.....)))((((((((((((((((((((..(........)..)))))))))))..))))))...))).))))..))).....))).... ( -37.60) >DroAna_CAF1 144152 95 + 1 --------CG----------------GUGG-GACAACCCGUGGCGCAAAUAAAAAGUCAGGUUUUUAACUAAAUGACUUUUUGUUGUUGUGCACACGCAUUGCUACACACAAACGCACUC --------..----------------((((-(.(((..(((((((((((((((((((((..(........)..)))))))))))..)))))).))))..))))).)))............ ( -29.20) >DroPer_CAF1 147459 95 + 1 --------UGGC---A-------------A-GGCAGCCCGCGGCGCAAAUAAAAAGUCAGGUUUUUAACUAAAUGACUUUUUGUUGUUGUGCACACGCAUUGCUACACACAAACGCACUC --------((((---(-------------(-((....))((((((((((((((((((((..(........)..)))))))))))..))))))...))).))))))............... ( -26.60) >consensus ________GGGCUGCA__________GUGG_GACAACCCGCGGCGCAAAUAAAAAGUCAGGUUUUUAACUAAAUGACUUUUUGUUGUUGUGCACACGCAUUGCUACACACAAACGCACUC .......................................((((((((((((((((((((..(........)..)))))))))))..))))))....((...))..........))).... (-20.06 = -20.25 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:47 2006