Locus 8920

Sequence ID 3R_DroMel_CAF1
Location 23,932,159 – 23,932,250
Length 91
Max. P 0.635578
window14306

overview

Window 6

Location 23,932,159 – 23,932,250
Length 91
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 78.56
Mean single sequence MFE -21.29
Consensus MFE -16.20
Energy contribution -16.57
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -1.04
Structure conservation index 0.76
SVM decision value 0.21
SVM RNA-class probability 0.635578
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23932159 91 - 27905053
AAAGUCCAACAUUAAGUUCCAGGUAUUUGCAACUUUUCGACAAAGGAUUUUUGGCUGCAAUCGCGGCCAUAAAUUA----------------CGACUAUCCCCAUUC--------
..((((.......(((((.(((....))).)))))..........(((((.(((((((....))))))).))))).----------------.))))..........-------- ( -20.50)
>DroVir_CAF1 130913 92 - 1
AAAGUCCAACAUUAAGUUCCAGGUAUUUGCAACUUUUCGACAAAGGAUUUUUGGCUGCAAUCGCGGCCAUAAAUUAUCCG---------------CUCGCCACUGCG--------
...(((.......(((((.(((....))).)))))...)))...((((...(((((((....)))))))......))))(---------------(........)).-------- ( -22.30)
>DroGri_CAF1 102782 92 - 1
AAAGUCCAACAUUAAGUUCCAGGUAUUUGCAACUUUUCGACAAAGGAUUUUUGGCUGCAAUCGCGGCCAUAAAUUAUCCG---------------CUCUCCACUGUG--------
...(((.......(((((.(((....))).)))))...)))...((((...(((((((....)))))))......)))).---------------............-------- ( -20.50)
>DroWil_CAF1 173703 93 - 1
AAAGUCCAACAUUAAGUUCCAGGUAUUUGCAACUCUUCGACAAAGGAUUUUUGGCUGCAAUCGCGACCAUAAAUUAUCCG-----------------UUCACCAUUGCGU-----
.(((((((((.....)))...)).))))((((......(((....(((((.(((.(((....))).))).)))))....)-----------------)).....))))..----- ( -13.50)
>DroAna_CAF1 142193 110 - 1
AAAGUCCAACAUUAAGUUCCAGGUAUUUGCAACUUUUCGACAAAGGAUUUUUGGCUGCAAUCGCGGCAAUAAAUUAUCC--AGCCCACGCCCCAGCCAACCCGGUCC---ACGCC
...(((.......(((((.(((....))).)))))...)))...(((((.(((((((....((.(((............--.)))..))...)))))))...)))))---..... ( -22.32)
>DroPer_CAF1 145067 109 - 1
AAAGUCCAACACUAAGUUCCAGGUAUUUGCAACUUUUCGACAAAGGAUUUUUGGCUGCAAUCGUGGCCAUAAAUUAUCCUCUGGCCACCCCACAGCCUGGUUGUUCC---UG---
...................((((.....((((((.(((......))).....(((((.....(((((((............)))))))....))))).)))))).))---))--- ( -28.60)
>consensus
AAAGUCCAACAUUAAGUUCCAGGUAUUUGCAACUUUUCGACAAAGGAUUUUUGGCUGCAAUCGCGGCCAUAAAUUAUCCG_______________CUAUCCCCUUCC________
...(((.......(((((.(((....))).)))))...)))....(((((.(((((((....))))))).)))))........................................ (-16.20 = -16.57 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:45 2006