Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,017,427 – 3,017,533 |
Length | 106 |
Max. P | 0.565047 |
Location | 3,017,427 – 3,017,533 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 79.88 |
Mean single sequence MFE | -21.73 |
Consensus MFE | -14.98 |
Energy contribution | -14.60 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.32 |
Mean z-score | -1.22 |
Structure conservation index | 0.69 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565047 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3017427 106 + 27905053 UAAAA-----CUAUAACGACUUUAAUAUUUUUCAGGCGUCAUCAAUAUGAGCUUUAUGCUCUUGUUCCGCGAUCUCAUACGAUUGUUUGCUUGCUACAAUGAUGGCAUCAU .....-----........................(..(((((((....((((.....))))..((...((((((......))))))..)).........)))))))..).. ( -21.10) >DroSim_CAF1 4328 106 + 1 UAAAA-----UUAUAACGAUUUUAAUAUUUUUCAGGCGUCAUCAACAUGAGCUUUAUGCUCUUGUUCCGCGAUCUCAUACGAUUGUUUGCUUGCUACAAUGAUGGCAUCAU (((((-----((.....)))))))..........(..((((((((((.((((.....)))).)))...((((((......)))))).............)))))))..).. ( -23.60) >DroEre_CAF1 4382 111 + 1 UAAAAUAUAAUUUCAACGAUUUGGAUAUUUUUCAGGCGUCAUCAAUAUGAGCUUUAUGCUCUUGUUUCGCGACCUCAUACGCUUGUUUGCUUGCUACAAUGAUGGCAUCAU .................((((((((.....)))))..(((((((....((((.....))))((((...((((.(.((......))...).)))).)))))))))))))).. ( -21.70) >DroWil_CAF1 6109 111 + 1 UUAAAUCUAAGCAUAAUACGUUCAUUAUAUUGCAGGUGUUAUUAACAUGAGUUUCAUGUUACUCUUUCGCGAUCUCAUACGUCUGUUUGCCUGCUAUAAUGAUGGCAUCAU ..................(((.(((((((..((((((.....(((((((.....))))))).......(((........)))......))))))))))))))))....... ( -23.60) >DroYak_CAF1 3927 111 + 1 UAAAAUGUAAAUAUAACGAUUUUGAUCAUUUUCAGGCGUCAUCAAUAUGAGCUUUAUGCUCUUGUUCCGCGAUCUCAUACGAUUGUUUGCUUGCUACAAUGAUGGCAUUAU ....................(((((......))))).(((((((....((((.....))))..((...((((((......))))))..)).........)))))))..... ( -22.10) >DroAna_CAF1 3559 103 + 1 ---AUUAUUAAU---ACAUUUCUGAUCCA--AUAGGCGUCAUAAAUAUGAGCUUUAUGCUCUUAUUCCGCGAUCUCAUACGUCUGUUUGCUUGCUACAACGAUGGCAUCAU ---.........---.......(((((((--....(((..((((....((((.....))))))))..))).........(((.(((..(....).)))))).))).)))). ( -18.30) >consensus UAAAAU_UAAAUAUAACGAUUUUAAUAUUUUUCAGGCGUCAUCAAUAUGAGCUUUAUGCUCUUGUUCCGCGAUCUCAUACGAUUGUUUGCUUGCUACAAUGAUGGCAUCAU ..................................((.((((((((((.((((.....)))).))))..((((...((......)).))))..........)))))).)).. (-14.98 = -14.60 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:46 2006