Locus 8919

Sequence ID 3R_DroMel_CAF1
Location 23,930,286 – 23,930,395
Length 109
Max. P 0.996739
window14305

overview

Window 5

Location 23,930,286 – 23,930,395
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 95.23
Mean single sequence MFE -26.48
Consensus MFE -22.89
Energy contribution -22.89
Covariance contribution 0.00
Combinations/Pair 1.08
Mean z-score -2.34
Structure conservation index 0.86
SVM decision value 2.74
SVM RNA-class probability 0.996739
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23930286 109 - 27905053
GACAAUGCCCAAGGAGCGACGCCCGAAAAUAAAUGCAAUUAAAAGCGAUAAAAAUAAAGGAAAGCGACUUUAAUGGCACAGGGCAUUUAGUGGACUGCCGCUAAGAUAA
.....(((((..((.((...)))).........(((.((((((.((.................))...)))))).)))..)))))((((((((....)))))))).... ( -26.63)
>DroSec_CAF1 131849 109 - 1
GACAAUGCCCAAGGAGCGACGCCCGAAAAUAAAUGCAAUUAAAAGCGAUAAAAAUAAAGGAAAGCGACUUUAAUGGCACAGGGCAUUUAGUGGAACGCCGCUAAGAUAA
.....(((((..((.((...)))).........(((.((((((.((.................))...)))))).)))..)))))((((((((....)))))))).... ( -26.63)
>DroSim_CAF1 133190 109 - 1
GACAAUGCCCAAGGAGCGACGCCCGAAAAUAAAUGCAAUUAAAAGCGAUAAAAAUAAAGGAAAGCGACUUUAAUGGCACAGGGCAUUUAGUGGAACGCCGCUUAGAUAA
...(((((((..((.((...)))).........(((.((((((.((.................))...)))))).)))..))))))).(((((....)))))....... ( -24.53)
>DroEre_CAF1 137407 109 - 1
GACAAUGCCCAAGGAGCGAAGGCCGAAAAUAAAUGCAAUUAAAAGCGAUACAAAUAAAGGAAGGCGACUUUAAUGGCGCUGGGCAUUUAGUGGACUGCCGCUAAGAUAA
.....(((((...(.((....)))...................((((...((..(((((........))))).)).)))))))))((((((((....)))))))).... ( -29.20)
>DroYak_CAF1 139496 109 - 1
GACAAUGCCCAAGGAGCGACGGGCGAAAAUAAAUGCAAUUAAAAGCGAUAAAAAUAAAGGAAAGCGACUUUAAUGGCGCAGGGCAUUUAGUGGACUGUCGCUAAGAUAA
..............((((((((.(.(...(((((((........((.((.....(((((........))))))).)).....))))))).).).))))))))....... ( -25.42)
>consensus
GACAAUGCCCAAGGAGCGACGCCCGAAAAUAAAUGCAAUUAAAAGCGAUAAAAAUAAAGGAAAGCGACUUUAAUGGCACAGGGCAUUUAGUGGACUGCCGCUAAGAUAA
.....(((((..((........)).........(((.((((((.((.................))...)))))).)))..)))))((((((((....)))))))).... (-22.89 = -22.89 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:44 2006