Locus 8918

Sequence ID 3R_DroMel_CAF1
Location 23,929,154 – 23,929,247
Length 93
Max. P 0.791245
window14304

overview

Window 4

Location 23,929,154 – 23,929,247
Length 93
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 86.43
Mean single sequence MFE -32.05
Consensus MFE -26.72
Energy contribution -26.12
Covariance contribution -0.60
Combinations/Pair 1.30
Mean z-score -2.08
Structure conservation index 0.83
SVM decision value 0.59
SVM RNA-class probability 0.791245
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23929154 93 - 27905053
-----G-GGCGCUAGGGAUAAUUUUGAUUGCCUGCGCUUUUUGGCCGCUCCGAAUGUGCGUGCGUGUUGGCCUGUUAAUAAGCUGGCCAACUACUAUAU
-----.-.((((..(((.((((....)))))))((((..(((((.....))))).))))))))(((((((((.(((....))).))))))).))..... ( -32.00)
>DroSec_CAF1 130735 90 - 1
-----G-GGCGGUCGGGAUAAUUUUGAUUGCCUGCGCUUUUUGGCCGCUCCGAAUGUGCGUGCGUGUUGGCCUGUUAAUAAGCUGGCCAAC---UAUAU
-----(-(((((((((((...))))))))))))((((..(((((.....)))))...))))....(((((((.(((....))).)))))))---..... ( -35.10)
>DroSim_CAF1 132069 90 - 1
-----G-GGCGGUCGGGAUAAUUUUGAUUGCCUGCGCUUUUUGGCCGCUCCGAAUGUGCGUGCGAGUUGGCCUGUUAAUAAGCUGGCCAAC---UAUAU
-----(-(((((((((((...))))))))))))((((..(((((.....)))))...))))...((((((((.(((....))).)))))))---).... ( -36.60)
>DroEre_CAF1 136265 95 - 1
GCGGUG-GGCGGUCGGGAUAAUUUUGAUUGCCUGCGCUUUUUGGCCACUUCGAAUGUGCGUGCGUGUUGGCCUGUUAAUAAGCUGGCCAAC---UAUAU
((((..-(((((((((((...)))))))))))..)((..(((((.....)))))...)).)))..(((((((.(((....))).)))))))---..... ( -35.90)
>DroYak_CAF1 138261 90 - 1
-----G-GUUGGUUGGGAUAAUUUUGAUUGCCUGCGCUUUUUGGCCACUUCGAAUGUGCGUGCGUGUUGGCCUGUUAAUAAGCUGGCCAAC---UAUAU
-----(-((((((..(.............((.(((((..(((((.....))))).))))).)).((((((....))))))..)..))))))---).... ( -25.30)
>DroPer_CAF1 141771 94 - 1
AUGGAGAGCUGUUCAGGAUAAUUUUGAUUGCCUGUGCUUUUUGCC-G-UGCUAGCCUGCGUGCGUGUUGGGCUGUUAAUAAGCUGCUCAAC---UAUGG
..(((((((....((((.((((....)))))))).)))))))(((-(-(........))).))..(((((((.(((....))).)))))))---..... ( -27.40)
>consensus
_____G_GGCGGUCGGGAUAAUUUUGAUUGCCUGCGCUUUUUGGCCGCUCCGAAUGUGCGUGCGUGUUGGCCUGUUAAUAAGCUGGCCAAC___UAUAU
.......(((((((((((...))))))))))).((((..(((((.....)))))...))))....(((((((.(((....))).)))))))........ (-26.72 = -26.12 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:43 2006